miRNA display CGI


Results 161 - 180 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 69374 0.77 0.982879
Target:  5'- gUUUAACACCUAAaCUAUAUGCUUAUu -3'
miRNA:   3'- gAAAUUGUGGAUUcGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 69071 0.77 0.982879
Target:  5'- -gUUAACACCUAAGCUuaAUAUGCUUg- -3'
miRNA:   3'- gaAAUUGUGGAUUCGA--UAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 16467 0.77 0.982879
Target:  5'- uUUUAACACCUAAaCUAUAcACUCGCa -3'
miRNA:   3'- gAAAUUGUGGAUUcGAUAUaUGGGUG- -5'
28261 3' -43 NC_005902.1 + 180622 0.77 0.988411
Target:  5'- uCUUUAACACCUAAGCUuAUAUGaaCAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGA-UAUAUggGUg -5'
28261 3' -43 NC_005902.1 + 5115 0.77 0.982879
Target:  5'- uCUUUAACAUCUAAGCaAUAUAUuuGCu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGaUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 81112 0.77 0.986748
Target:  5'- -cUUAACcCUUAAGUUAUAUACUCACu -3'
miRNA:   3'- gaAAUUGuGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 100671 0.77 0.986748
Target:  5'- cCUUUAAUAUCUAAGCUAUAUAUgCu- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGgGug -5'
28261 3' -43 NC_005902.1 + 158121 0.77 0.982879
Target:  5'- cCUUUAAUACUUAAGCUAUAUACa--- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 90061 0.77 0.986748
Target:  5'- -cUUAACACCUAAGUUAUAUACa--- -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 117937 0.77 0.982879
Target:  5'- --cUAcCACCUAAGUUAUAUGCUUACu -3'
miRNA:   3'- gaaAUuGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 111392 0.77 0.988411
Target:  5'- gCUUUAACaccACCUAAGUUAUAUACUUAa -3'
miRNA:   3'- -GAAAUUG---UGGAUUCGAUAUAUGGGUg -5'
28261 3' -43 NC_005902.1 + 84934 0.77 0.986748
Target:  5'- cCUUUAACACUUAAGCaAUAUACaaACg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGaUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 104088 0.77 0.988411
Target:  5'- uUUUAACccuuuACUUAAGCUAUAUACUUACu -3'
miRNA:   3'- gAAAUUG-----UGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 159743 0.78 0.97267
Target:  5'- uUUUAAUACCUAAGCUAUAUAUaaAUg -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 16878 0.78 0.978214
Target:  5'- cCUUUAACACCUAAGCUAUAU-CaaguaaGCa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAuGgg----UG- -5'
28261 3' -43 NC_005902.1 + 23414 0.78 0.978214
Target:  5'- -gUUAACACCcAAGCUAUAUACaaACa -3'
miRNA:   3'- gaAAUUGUGGaUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 142274 0.78 0.97267
Target:  5'- ---aAACACCUAuGCUAUAUACUUGCu -3'
miRNA:   3'- gaaaUUGUGGAUuCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 179474 0.78 0.97267
Target:  5'- -gUUAACACCUAAGUuauuuaUAUAUACUCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCG------AUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 148754 0.78 0.975556
Target:  5'- cCUUUAACACUUAAGCUAUAUGaaCGg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUggGUg -5'
28261 3' -43 NC_005902.1 + 90612 0.78 0.980651
Target:  5'- ---aAACACCUAAGCUGUAUAUgaACu -3'
miRNA:   3'- gaaaUUGUGGAUUCGAUAUAUGggUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.