miRNA display CGI


Results 181 - 200 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 71200 0.8 0.94536
Target:  5'- uUUUAACACUUAAGCUAUAUACaaAUa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 87363 0.8 0.94536
Target:  5'- -cUUAAUACCUAAGCUAuauaUAUACUCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAU----AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 145047 0.8 0.944873
Target:  5'- uCUUUAGCACCUAAGCUAUAUgugaguguauauaGCUUAg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUA-------------UGGGUg -5'
28261 3' -43 NC_005902.1 + 137900 0.8 0.950069
Target:  5'- -gUUAACAUCUAAGCUAUAUAUgUGCu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 135960 0.8 0.9545
Target:  5'- -gUUAAUACCUAAGCUAUAUACaagugaGCa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGgg----UG- -5'
28261 3' -43 NC_005902.1 + 94703 0.8 0.9545
Target:  5'- -cUUAAUACCUAAGCUAUGUACaaAUg -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 69184 0.8 0.94536
Target:  5'- cCUUUAACAUCUAAGCUAUAUGaaCAg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUggGUg -5'
28261 3' -43 NC_005902.1 + 133624 0.8 0.940368
Target:  5'- -gUUAACACUUAAGCUAUAUACaUACu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 166129 0.8 0.9545
Target:  5'- cCUUUAAUACUUAAGCUAUAUacauGCUCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUA----UGGGUG- -5'
28261 3' -43 NC_005902.1 + 54939 0.79 0.969545
Target:  5'- cCUUUAAUACUUAAGCUAUAUAUgaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 40067 0.79 0.966173
Target:  5'- cCUUUAACACUUAAGCUAUAUAUgaAUg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 124391 0.79 0.969545
Target:  5'- uCUUUAACAUCUAAGCUA--UACUCAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUauAUGGGUg -5'
28261 3' -43 NC_005902.1 + 10388 0.79 0.958658
Target:  5'- cCUUUAAUACUUAAaCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 48112 0.79 0.958658
Target:  5'- cCUUUAACAUUUAAGCUAUAUACaaaugagCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGg------GUG- -5'
28261 3' -43 NC_005902.1 + 61525 0.79 0.958658
Target:  5'- cCUUUAAUACUUAAGCUAUAUAUgaGCa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 147595 0.79 0.958658
Target:  5'- --gUAACACCUAAGCUAUAUAUaaaugagCGCa -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGg------GUG- -5'
28261 3' -43 NC_005902.1 + 28156 0.79 0.966173
Target:  5'- uUUUAACACCUAAGCUAUAUAaaguguaGCa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUggg----UG- -5'
28261 3' -43 NC_005902.1 + 75148 0.79 0.969545
Target:  5'- ---aAAgGgUUAAGCUAUAUACCCACa -3'
miRNA:   3'- gaaaUUgUgGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 141935 0.79 0.962546
Target:  5'- uCUUUAACAgCUAAaCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUgGAUUcGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 32357 0.79 0.969545
Target:  5'- -gUUAACAUCUAAaCUAUAUACUCACu -3'
miRNA:   3'- gaAAUUGUGGAUUcGAUAUAUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.