miRNA display CGI


Results 101 - 120 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 97177 0.85 0.773464
Target:  5'- cCUUUAACACCUAAGCUAUAUAUgaAUg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 116634 0.85 0.783657
Target:  5'- uUUUAACACCUAAGCUAUAUACa--- -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 102267 0.85 0.773464
Target:  5'- cCUUUAACACUUAAGUgAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGaUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 1147 0.85 0.793687
Target:  5'- cCUUUAAgACCUAAGCUGUAUACaaACa -3'
miRNA:   3'- -GAAAUUgUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 140924 0.85 0.783657
Target:  5'- --aUAACACCUAAGCUAUAUACgaACa -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 38412 0.85 0.793687
Target:  5'- -aUUAACAUCUAAGCUAUAcACUCACu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUaUGGGUG- -5'
28261 3' -43 NC_005902.1 + 28837 0.85 0.773464
Target:  5'- -gUUAAUACCUAAGCUAUAUAUUUACu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 109360 0.85 0.793687
Target:  5'- cCUUUAACACUUAAGCUAUAUAUaaGCa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 109797 0.85 0.793687
Target:  5'- cCUUUAACACCUAAGUUAUAUAUuuagUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUG----GGUG- -5'
28261 3' -43 NC_005902.1 + 46938 0.85 0.793687
Target:  5'- -gUUAAUACCUAAGCUAUAUGCaaGCa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 170702 0.85 0.793687
Target:  5'- uCUUUAACACCUAAGCUAUAUAUgaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 109918 0.85 0.793687
Target:  5'- cCUUUAAgACCUAAGCUAUAUGCaaACa -3'
miRNA:   3'- -GAAAUUgUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 20282 0.85 0.783657
Target:  5'- cCUUUAACACCUAAGUUAacaUAUACUUACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAU---AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 32978 0.85 0.793687
Target:  5'- -gUUAACACCUAAaCUAUAUACUCACu -3'
miRNA:   3'- gaAAUUGUGGAUUcGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 173890 0.85 0.783657
Target:  5'- -gUUAAUACUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 54343 0.85 0.773464
Target:  5'- -aUUAACACCUAAGCUAUAUauauGCUCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUA----UGGGUG- -5'
28261 3' -43 NC_005902.1 + 23467 0.85 0.773464
Target:  5'- cCUUUAACACCUAAuCUAUAUACUUACu -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 147754 0.85 0.773464
Target:  5'- aCUUUAACAUCUAAGCUAUAa--CCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUaugGGUG- -5'
28261 3' -43 NC_005902.1 + 133836 0.85 0.783657
Target:  5'- cCUUUAACACCUAAGUgAUAUACCUg- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGaUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 4612 0.84 0.822677
Target:  5'- cCUUUAACAUCUAAGCgAUAUACUUACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGaUAUAUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.