miRNA display CGI


Results 121 - 140 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 50821 0.84 0.822677
Target:  5'- cCUUUAACAUCUAAaCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 137753 0.84 0.822677
Target:  5'- cCUUUAACACUUAAGCUAUAUAUaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 15152 0.84 0.831938
Target:  5'- uUUUAACAUgUAAGCUAUAUACUUACu -3'
miRNA:   3'- gAAAUUGUGgAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 18751 0.84 0.831938
Target:  5'- cCUUUAACACCUAAGUUAUAUACaaguaaGCa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGgg----UG- -5'
28261 3' -43 NC_005902.1 + 131666 0.84 0.813208
Target:  5'- cCUUUAACACCUAAGCUAUAcAUaCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUaUGgGUG- -5'
28261 3' -43 NC_005902.1 + 184752 0.84 0.803541
Target:  5'- --cUAACACCUGAGCUAuaUAUACUCAUu -3'
miRNA:   3'- gaaAUUGUGGAUUCGAU--AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 137776 0.84 0.831937
Target:  5'- uUUUAACACCUAAGCUAUAUAUaCAa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGgGUg -5'
28261 3' -43 NC_005902.1 + 42241 0.84 0.822677
Target:  5'- -cUUAACACCUAAGCUAUAUACaaAUg -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 30799 0.84 0.813208
Target:  5'- cCUUUAACAUCUAAGCUAUAUACgCu- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGgGug -5'
28261 3' -43 NC_005902.1 + 68936 0.84 0.813208
Target:  5'- uUUUAACACUUAAGCUAUAUACaaACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 88298 0.84 0.803541
Target:  5'- -aUUAACACCUAAGCUAUAUGCaaAUa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 146595 0.84 0.803541
Target:  5'- --cUAACAUCUAAGCUAUAUACUUGCu -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 104719 0.83 0.840979
Target:  5'- cCUUUAACuuUUAAGCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGugGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 159509 0.83 0.840979
Target:  5'- cCUUUAACAUUUAAGCUAuuaUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAU---AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 99987 0.83 0.849792
Target:  5'- cCUUUAACAUCUAAGCUAUAUAUgaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 162536 0.83 0.858367
Target:  5'- cCUUUAACACUUAAGCUAUAUACa-ACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 49954 0.83 0.866695
Target:  5'- cCUUUAACuCCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 158230 0.83 0.866695
Target:  5'- cCUUUAAUGCCUAAGCUAUAUACaaAUg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 77101 0.83 0.87477
Target:  5'- --cUAACACUUAAGCuUAUAUACUCACu -3'
miRNA:   3'- gaaAUUGUGGAUUCG-AUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 86444 0.83 0.866695
Target:  5'- uCUUUAACACUUAAGCUAUAUACaaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.