miRNA display CGI


Results 141 - 160 of 392 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 77101 0.83 0.87477
Target:  5'- --cUAACACUUAAGCuUAUAUACUCACu -3'
miRNA:   3'- gaaAUUGUGGAUUCG-AUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 49954 0.83 0.866695
Target:  5'- cCUUUAACuCCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 162536 0.83 0.858367
Target:  5'- cCUUUAACACUUAAGCUAUAUACa-ACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 99987 0.83 0.849792
Target:  5'- cCUUUAACAUCUAAGCUAUAUAUgaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 159509 0.83 0.840979
Target:  5'- cCUUUAACAUUUAAGCUAuuaUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAU---AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 104719 0.83 0.840979
Target:  5'- cCUUUAACuuUUAAGCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGugGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 86444 0.83 0.866695
Target:  5'- uCUUUAACACUUAAGCUAUAUACaaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 174464 0.83 0.87477
Target:  5'- uCUUUuuACAUCUAAGCUAUAUACUUACu -3'
miRNA:   3'- -GAAAu-UGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 134163 0.82 0.882583
Target:  5'- aUUUAACAUCUAAGCUAuaUAUACUUACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAU--AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 23609 0.82 0.890128
Target:  5'- uCUUUAACACCUAAGCUA--UACaCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUauAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 51851 0.82 0.890128
Target:  5'- cCUUUAACAUCUAAGCUAUAUACa--- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 117731 0.82 0.890128
Target:  5'- cCUUUAACAUCUAAGCUAUAUGCa--- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 134580 0.82 0.8974
Target:  5'- cCUUUAACAUUUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 165720 0.82 0.8974
Target:  5'- -aUUAACACCUAAGCUAUAUAUaCAa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGgGUg -5'
28261 3' -43 NC_005902.1 + 151289 0.82 0.8974
Target:  5'- -cUUAACACCUAAGCUAUAUAUauuuaguugCUACa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUG---------GGUG- -5'
28261 3' -43 NC_005902.1 + 116830 0.82 0.8974
Target:  5'- cCUUUAACAUCUAAGUUAUAUACaCCu- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUG-GGug -5'
28261 3' -43 NC_005902.1 + 114358 0.82 0.8974
Target:  5'- --cUAACACCUAAGCUAUAUACaaAUa -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 92162 0.82 0.8974
Target:  5'- uUUUAACAaCUAAGCUAUAUACUUACu -3'
miRNA:   3'- gAAAUUGUgGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 37260 0.82 0.8974
Target:  5'- -cUUAACACUUAAGCUAUAuacaUACCCGu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAU----AUGGGUg -5'
28261 3' -43 NC_005902.1 + 49109 0.82 0.8974
Target:  5'- aCUUUAAUACCUAcaCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUucGAUAUAUGGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.