miRNA display CGI


Results 161 - 180 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 151289 0.82 0.8974
Target:  5'- -cUUAACACCUAAGCUAUAUAUauuuaguugCUACa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUG---------GGUG- -5'
28261 3' -43 NC_005902.1 + 37260 0.82 0.8974
Target:  5'- -cUUAACACUUAAGCUAUAuacaUACCCGu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAU----AUGGGUg -5'
28261 3' -43 NC_005902.1 + 154917 0.81 0.917533
Target:  5'- uUUUAACAUCcAAGCUAUAUACUCAUu -3'
miRNA:   3'- gAAAUUGUGGaUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 23289 0.81 0.929526
Target:  5'- cCUUUAAUACCUAAGCUAUAUAUgaAUg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 85618 0.81 0.929526
Target:  5'- cCUUUAACcCUUAAGCUAUAUACUgACu -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUGGgUG- -5'
28261 3' -43 NC_005902.1 + 137434 0.81 0.917533
Target:  5'- uUUUAACACCUAAaCUAUAUAUUCACu -3'
miRNA:   3'- gAAAUUGUGGAUUcGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 135893 0.81 0.911106
Target:  5'- uCUUUAACAUUUAAGCUAUGUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 5650 0.81 0.929526
Target:  5'- cCUUUAACAaUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUgGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 7602 0.81 0.929526
Target:  5'- cCUUUAACACCUAAaUUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 36165 0.81 0.923674
Target:  5'- uUUUAACAUCUAAGCUAUAUAUaaACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 27883 0.81 0.923674
Target:  5'- -gUUAAUGCCUAAGCUAUAUAUgCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 78860 0.8 0.93509
Target:  5'- uUUUAACcCUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- gAAAUUGuGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 116945 0.8 0.93509
Target:  5'- cCUUUAACACCUAGGUUAUAUAaaCAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUggGUg -5'
28261 3' -43 NC_005902.1 + 133624 0.8 0.940368
Target:  5'- -gUUAACACUUAAGCUAUAUACaUACu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 37771 0.8 0.940368
Target:  5'- uUUUAACACCUAAGCUugcUAUGCUUAUu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAu--AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 145047 0.8 0.944873
Target:  5'- uCUUUAGCACCUAAGCUAUAUgugaguguauauaGCUUAg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUA-------------UGGGUg -5'
28261 3' -43 NC_005902.1 + 69184 0.8 0.94536
Target:  5'- cCUUUAACAUCUAAGCUAUAUGaaCAg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUggGUg -5'
28261 3' -43 NC_005902.1 + 71200 0.8 0.94536
Target:  5'- uUUUAACACUUAAGCUAUAUACaaAUa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 87363 0.8 0.94536
Target:  5'- -cUUAAUACCUAAGCUAuauaUAUACUCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAU----AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 101068 0.8 0.950069
Target:  5'- uUUUAACACUUAAGCgAUAUAUUCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGaUAUAUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.