Results 101 - 120 of 392 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28261 | 3' | -43 | NC_005902.1 | + | 23467 | 0.85 | 0.773464 |
Target: 5'- cCUUUAACACCUAAuCUAUAUACUUACu -3' miRNA: 3'- -GAAAUUGUGGAUUcGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 147754 | 0.85 | 0.773464 |
Target: 5'- aCUUUAACAUCUAAGCUAUAa--CCACa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUaugGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 102267 | 0.85 | 0.773464 |
Target: 5'- cCUUUAACACUUAAGUgAUAUACUCACu -3' miRNA: 3'- -GAAAUUGUGGAUUCGaUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 97177 | 0.85 | 0.773464 |
Target: 5'- cCUUUAACACCUAAGCUAUAUAUgaAUg -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 28837 | 0.85 | 0.773464 |
Target: 5'- -gUUAAUACCUAAGCUAUAUAUUUACu -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 54343 | 0.85 | 0.773464 |
Target: 5'- -aUUAACACCUAAGCUAUAUauauGCUCAUu -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUA----UGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 173890 | 0.85 | 0.783657 |
Target: 5'- -gUUAAUACUUAAGCUAUAUACUCAUu -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 116634 | 0.85 | 0.783657 |
Target: 5'- uUUUAACACCUAAGCUAUAUACa--- -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGggug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 140924 | 0.85 | 0.783657 |
Target: 5'- --aUAACACCUAAGCUAUAUACgaACa -3' miRNA: 3'- gaaAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 133836 | 0.85 | 0.783657 |
Target: 5'- cCUUUAACACCUAAGUgAUAUACCUg- -3' miRNA: 3'- -GAAAUUGUGGAUUCGaUAUAUGGGug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 20282 | 0.85 | 0.783657 |
Target: 5'- cCUUUAACACCUAAGUUAacaUAUACUUACu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAU---AUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 38412 | 0.85 | 0.793687 |
Target: 5'- -aUUAACAUCUAAGCUAUAcACUCACu -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUaUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 109360 | 0.85 | 0.793687 |
Target: 5'- cCUUUAACACUUAAGCUAUAUAUaaGCa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 109797 | 0.85 | 0.793687 |
Target: 5'- cCUUUAACACCUAAGUUAUAUAUuuagUCACu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUG----GGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 170702 | 0.85 | 0.793687 |
Target: 5'- uCUUUAACACCUAAGCUAUAUAUgaAUa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 46938 | 0.85 | 0.793687 |
Target: 5'- -gUUAAUACCUAAGCUAUAUGCaaGCa -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 1147 | 0.85 | 0.793687 |
Target: 5'- cCUUUAAgACCUAAGCUGUAUACaaACa -3' miRNA: 3'- -GAAAUUgUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 109918 | 0.85 | 0.793687 |
Target: 5'- cCUUUAAgACCUAAGCUAUAUGCaaACa -3' miRNA: 3'- -GAAAUUgUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 32978 | 0.85 | 0.793687 |
Target: 5'- -gUUAACACCUAAaCUAUAUACUCACu -3' miRNA: 3'- gaAAUUGUGGAUUcGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 184752 | 0.84 | 0.803541 |
Target: 5'- --cUAACACCUGAGCUAuaUAUACUCAUu -3' miRNA: 3'- gaaAUUGUGGAUUCGAU--AUAUGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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