Results 121 - 140 of 392 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28261 | 3' | -43 | NC_005902.1 | + | 146595 | 0.84 | 0.803541 |
Target: 5'- --cUAACAUCUAAGCUAUAUACUUGCu -3' miRNA: 3'- gaaAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 88298 | 0.84 | 0.803541 |
Target: 5'- -aUUAACACCUAAGCUAUAUGCaaAUa -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 68936 | 0.84 | 0.813208 |
Target: 5'- uUUUAACACUUAAGCUAUAUACaaACa -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 30799 | 0.84 | 0.813208 |
Target: 5'- cCUUUAACAUCUAAGCUAUAUACgCu- -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGgGug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 131666 | 0.84 | 0.813208 |
Target: 5'- cCUUUAACACCUAAGCUAUAcAUaCACa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUaUGgGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 4612 | 0.84 | 0.822677 |
Target: 5'- cCUUUAACAUCUAAGCgAUAUACUUACu -3' miRNA: 3'- -GAAAUUGUGGAUUCGaUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 137753 | 0.84 | 0.822677 |
Target: 5'- cCUUUAACACUUAAGCUAUAUAUaaACa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 50821 | 0.84 | 0.822677 |
Target: 5'- cCUUUAACAUCUAAaCUAUAUACUCACu -3' miRNA: 3'- -GAAAUUGUGGAUUcGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 42241 | 0.84 | 0.822677 |
Target: 5'- -cUUAACACCUAAGCUAUAUACaaAUg -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 137776 | 0.84 | 0.831937 |
Target: 5'- uUUUAACACCUAAGCUAUAUAUaCAa -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGgGUg -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 18751 | 0.84 | 0.831938 |
Target: 5'- cCUUUAACACCUAAGUUAUAUACaaguaaGCa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGgg----UG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 15152 | 0.84 | 0.831938 |
Target: 5'- uUUUAACAUgUAAGCUAUAUACUUACu -3' miRNA: 3'- gAAAUUGUGgAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 85342 | 0.83 | 0.840979 |
Target: 5'- cCUUUAACAUCUAAGCUAUAUACaaAUa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 159509 | 0.83 | 0.840979 |
Target: 5'- cCUUUAACAUUUAAGCUAuuaUAUACUCACu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAU---AUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 104719 | 0.83 | 0.840979 |
Target: 5'- cCUUUAACuuUUAAGCUAUAUACUCACu -3' miRNA: 3'- -GAAAUUGugGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 61622 | 0.83 | 0.840979 |
Target: 5'- cCUUUAACAUCUAAGCUAUAUACaaAUg -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 167252 | 0.83 | 0.849792 |
Target: 5'- uUUUAACACCUAAGUUAUAUAUUCGu -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGGGUg -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 50115 | 0.83 | 0.849792 |
Target: 5'- --cUAACACCUAAGCUAcAUACUUACu -3' miRNA: 3'- gaaAUUGUGGAUUCGAUaUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 99987 | 0.83 | 0.849792 |
Target: 5'- cCUUUAACAUCUAAGCUAUAUAUgaACa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 85907 | 0.83 | 0.849792 |
Target: 5'- cCUUUAACAUCUAAGCUAUAUAUgaACa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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