Results 161 - 180 of 392 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28261 | 3' | -43 | NC_005902.1 | + | 181228 | 0.82 | 0.904394 |
Target: 5'- cCUUUAACuCCUAAGUUAUAUACUUGCu -3' miRNA: 3'- -GAAAUUGuGGAUUCGAUAUAUGGGUG- -5' |
|||||||
28261 | 3' | -43 | NC_005902.1 | + | 78212 | 0.82 | 0.904394 |
Target: 5'- uCUUUAACAUCUAAGCUAUAUACg--- -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggug -5' |
|||||||
28261 | 3' | -43 | NC_005902.1 | + | 135893 | 0.81 | 0.911106 |
Target: 5'- uCUUUAACAUUUAAGCUAUGUACaaACa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
|||||||
28261 | 3' | -43 | NC_005902.1 | + | 137434 | 0.81 | 0.917533 |
Target: 5'- uUUUAACACCUAAaCUAUAUAUUCACu -3' miRNA: 3'- gAAAUUGUGGAUUcGAUAUAUGGGUG- -5' |
|||||||
28261 | 3' | -43 | NC_005902.1 | + | 154917 | 0.81 | 0.917533 |
Target: 5'- uUUUAACAUCcAAGCUAUAUACUCAUu -3' miRNA: 3'- gAAAUUGUGGaUUCGAUAUAUGGGUG- -5' |
|||||||
28261 | 3' | -43 | NC_005902.1 | + | 36165 | 0.81 | 0.923674 |
Target: 5'- uUUUAACAUCUAAGCUAUAUAUaaACa -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
|||||||
28261 | 3' | -43 | NC_005902.1 | + | 27883 | 0.81 | 0.923674 |
Target: 5'- -gUUAAUGCCUAAGCUAUAUAUgCAUu -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5' |
|||||||
28261 | 3' | -43 | NC_005902.1 | + | 5650 | 0.81 | 0.929526 |
Target: 5'- cCUUUAACAaUUAAGCUAUAUACUCAUu -3' miRNA: 3'- -GAAAUUGUgGAUUCGAUAUAUGGGUG- -5' |
|||||||
28261 | 3' | -43 | NC_005902.1 | + | 85618 | 0.81 | 0.929526 |
Target: 5'- cCUUUAACcCUUAAGCUAUAUACUgACu -3' miRNA: 3'- -GAAAUUGuGGAUUCGAUAUAUGGgUG- -5' |
|||||||
28261 | 3' | -43 | NC_005902.1 | + | 23289 | 0.81 | 0.929526 |
Target: 5'- cCUUUAAUACCUAAGCUAUAUAUgaAUg -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
|||||||
28261 | 3' | -43 | NC_005902.1 | + | 7602 | 0.81 | 0.929526 |
Target: 5'- cCUUUAACACCUAAaUUAUAUACUCAUu -3' miRNA: 3'- -GAAAUUGUGGAUUcGAUAUAUGGGUG- -5' |
|||||||
28261 | 3' | -43 | NC_005902.1 | + | 103990 | 0.8 | 0.93509 |
Target: 5'- aUUUAAUAUUUAAGCUAUAUAUUCACu -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
|||||||
28261 | 3' | -43 | NC_005902.1 | + | 116945 | 0.8 | 0.93509 |
Target: 5'- cCUUUAACACCUAGGUUAUAUAaaCAa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUggGUg -5' |
|||||||
28261 | 3' | -43 | NC_005902.1 | + | 78860 | 0.8 | 0.93509 |
Target: 5'- uUUUAACcCUUAAGCUAUAUACUCAUu -3' miRNA: 3'- gAAAUUGuGGAUUCGAUAUAUGGGUG- -5' |
|||||||
28261 | 3' | -43 | NC_005902.1 | + | 37771 | 0.8 | 0.940368 |
Target: 5'- uUUUAACACCUAAGCUugcUAUGCUUAUu -3' miRNA: 3'- gAAAUUGUGGAUUCGAu--AUAUGGGUG- -5' |
|||||||
28261 | 3' | -43 | NC_005902.1 | + | 133624 | 0.8 | 0.940368 |
Target: 5'- -gUUAACACUUAAGCUAUAUACaUACu -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5' |
|||||||
28261 | 3' | -43 | NC_005902.1 | + | 145047 | 0.8 | 0.944873 |
Target: 5'- uCUUUAGCACCUAAGCUAUAUgugaguguauauaGCUUAg -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUA-------------UGGGUg -5' |
|||||||
28261 | 3' | -43 | NC_005902.1 | + | 71200 | 0.8 | 0.94536 |
Target: 5'- uUUUAACACUUAAGCUAUAUACaaAUa -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
|||||||
28261 | 3' | -43 | NC_005902.1 | + | 69184 | 0.8 | 0.94536 |
Target: 5'- cCUUUAACAUCUAAGCUAUAUGaaCAg -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUggGUg -5' |
|||||||
28261 | 3' | -43 | NC_005902.1 | + | 87363 | 0.8 | 0.94536 |
Target: 5'- -cUUAAUACCUAAGCUAuauaUAUACUCAUu -3' miRNA: 3'- gaAAUUGUGGAUUCGAU----AUAUGGGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home