Results 141 - 160 of 392 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28261 | 3' | -43 | NC_005902.1 | + | 108903 | 0.75 | 0.995994 |
Target: 5'- uUUUAACAgCUAGGCUAUAUACaaAUa -3' miRNA: 3'- gAAAUUGUgGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 81173 | 0.75 | 0.995994 |
Target: 5'- cCUUUAAUACCUAccuaAGCUAUAUAUgaGCg -3' miRNA: 3'- -GAAAUUGUGGAU----UCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 23222 | 0.75 | 0.995994 |
Target: 5'- --cUAAUAUCUAAGCUAUAUGCaaGCu -3' miRNA: 3'- gaaAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 91311 | 0.75 | 0.995271 |
Target: 5'- uUUUAACACUUAAaCUAUAUACgCACu -3' miRNA: 3'- gAAAUUGUGGAUUcGAUAUAUGgGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 125545 | 0.75 | 0.995271 |
Target: 5'- -gUUAACAUUUAAGCUAUAUAUaCACu -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 27664 | 0.75 | 0.995271 |
Target: 5'- -aUUAAUACCUAGGCUgcuAUAUACUUAUu -3' miRNA: 3'- gaAAUUGUGGAUUCGA---UAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 36971 | 0.75 | 0.995271 |
Target: 5'- -----uUACCUAAGCUAUAUACUUAUu -3' miRNA: 3'- gaaauuGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 174974 | 0.76 | 0.994445 |
Target: 5'- --cUAACACUUAAGCUAUAUACaaAUg -3' miRNA: 3'- gaaAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 76205 | 0.76 | 0.994445 |
Target: 5'- uUUUAAUACUUAAGCUAUAUACaaAUg -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 68285 | 0.76 | 0.993505 |
Target: 5'- uUUUAACuCCUAAGCcAUAUACUUACu -3' miRNA: 3'- gAAAUUGuGGAUUCGaUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 1263 | 0.76 | 0.993505 |
Target: 5'- uCUUcAACACCUAGGCUAUAUAUaaAUg -3' miRNA: 3'- -GAAaUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 101130 | 0.76 | 0.993505 |
Target: 5'- cCUUUaAAUAUUUAAGCUAUAUACUCAUu -3' miRNA: 3'- -GAAA-UUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 163390 | 0.76 | 0.993505 |
Target: 5'- uUUUAACAUCUAAGCUAUAUAUgaAUg -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 87126 | 0.76 | 0.993505 |
Target: 5'- -gUUAAUAUUUAAGCUAUAUAUgCACu -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 51610 | 0.76 | 0.991247 |
Target: 5'- cCUUUAAUACCUAAGCUGUGaAUaaGCg -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUaUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 71658 | 0.76 | 0.991247 |
Target: 5'- cCUUUAACACUUAAGUuaUAUAUGCUUAUu -3' miRNA: 3'- -GAAAUUGUGGAUUCG--AUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 76873 | 0.76 | 0.991247 |
Target: 5'- uCUUUAAUAUCUAAGCUAUAUAUaaaaACa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGgg--UG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 162754 | 0.76 | 0.991247 |
Target: 5'- cCUUUAACAUUUAAGCUAUAUGCa--- -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 117046 | 0.76 | 0.989907 |
Target: 5'- uUUUAAUACUUAAGCUAUAUAUUUAUu -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 170535 | 0.76 | 0.989907 |
Target: 5'- uUUUAACACCUAAaCUAUAUauacACUCACa -3' miRNA: 3'- gAAAUUGUGGAUUcGAUAUA----UGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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