miRNA display CGI


Results 121 - 140 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 54872 0.87 0.665166
Target:  5'- cCUUUAACACCUAAGCUAU-UACUCAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAuAUGGGUg -5'
28261 3' -43 NC_005902.1 + 54889 0.8 0.9545
Target:  5'- -cUUAAUACCUAAGCUAUAUACaaaagaaCAUa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGg------GUG- -5'
28261 3' -43 NC_005902.1 + 54939 0.79 0.969545
Target:  5'- cCUUUAAUACUUAAGCUAUAUAUgaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 55065 0.7 0.99999
Target:  5'- cCUUUAACACCUAAGUucacuUGUAUAUa-ACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCG-----AUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 58227 0.66 1
Target:  5'- uCUUUAACACaUAAGCUAUAUAg---- -3'
miRNA:   3'- -GAAAUUGUGgAUUCGAUAUAUgggug -5'
28261 3' -43 NC_005902.1 + 58402 0.66 1
Target:  5'- uUUUAACAUUUAuaCUAUAUACUCAUu -3'
miRNA:   3'- gAAAUUGUGGAUucGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 58535 0.9 0.520798
Target:  5'- gCUUUAACACUgAAGCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGaUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 58619 0.75 0.996624
Target:  5'- cCUUUAAgACUUAAGCUGUAUAUaaACa -3'
miRNA:   3'- -GAAAUUgUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 60468 0.9 0.531605
Target:  5'- cCUUUAACACCUAAGCUAUAUAUaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 61525 0.79 0.958658
Target:  5'- cCUUUAAUACUUAAGCUAUAUAUgaGCa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 61622 0.83 0.840979
Target:  5'- cCUUUAACAUCUAAGCUAUAUACaaAUg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 61676 0.75 0.996624
Target:  5'- -gUUAAUAUCUAAGCUA--UACUCACu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUauAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 63238 0.87 0.676335
Target:  5'- cCUUUAACcCCUAAGCUAUAUACUCGg -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUGGGUg -5'
28261 3' -43 NC_005902.1 + 63365 0.8 0.950069
Target:  5'- uCUUUAACAUCUcuAAGCUAUAcACUCACu -3'
miRNA:   3'- -GAAAUUGUGGA--UUCGAUAUaUGGGUG- -5'
28261 3' -43 NC_005902.1 + 65754 0.73 0.999558
Target:  5'- cCUUUAACACCUGAaCUAUAUAUgaaugaaCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGg------GUG- -5'
28261 3' -43 NC_005902.1 + 67708 0.66 1
Target:  5'- uUUUAACuCCUAGGCUAUAUAg---- -3'
miRNA:   3'- gAAAUUGuGGAUUCGAUAUAUgggug -5'
28261 3' -43 NC_005902.1 + 67931 0.69 0.999997
Target:  5'- cCUUUGACcCCUAA-CUAUAUACaCACu -3'
miRNA:   3'- -GAAAUUGuGGAUUcGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 68285 0.76 0.993505
Target:  5'- uUUUAACuCCUAAGCcAUAUACUUACu -3'
miRNA:   3'- gAAAUUGuGGAUUCGaUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 68936 0.84 0.813208
Target:  5'- uUUUAACACUUAAGCUAUAUACaaACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 69071 0.77 0.982879
Target:  5'- -gUUAACACCUAAGCUuaAUAUGCUUg- -3'
miRNA:   3'- gaAAUUGUGGAUUCGA--UAUAUGGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.