miRNA display CGI


Results 141 - 160 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 69184 0.8 0.94536
Target:  5'- cCUUUAACAUCUAAGCUAUAUGaaCAg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUggGUg -5'
28261 3' -43 NC_005902.1 + 69228 0.71 0.999876
Target:  5'- cCUUUAACACCUAAGU---AUACUCc- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGauaUAUGGGug -5'
28261 3' -43 NC_005902.1 + 69374 0.77 0.982879
Target:  5'- gUUUAACACCUAAaCUAUAUGCUUAUu -3'
miRNA:   3'- gAAAUUGUGGAUUcGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 71200 0.8 0.94536
Target:  5'- uUUUAACACUUAAGCUAUAUACaaAUa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 71211 0.72 0.999652
Target:  5'- uUUUAAUGCUUAAGCUAUAUACaCUc- -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUG-GGug -5'
28261 3' -43 NC_005902.1 + 71324 0.69 0.999995
Target:  5'- -gUUAACAUCUAAGUUAUAUAUaaAUa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 71605 1.05 0.098963
Target:  5'- cCUUUAACACCUAAGCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 71658 0.76 0.991247
Target:  5'- cCUUUAACACUUAAGUuaUAUAUGCUUAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCG--AUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 71754 0.66 1
Target:  5'- uUUUAACACCUAcaCUAcAUACUUGCu -3'
miRNA:   3'- gAAAUUGUGGAUucGAUaUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 72222 0.69 0.999997
Target:  5'- -gUUAACACCUAAaCUAUAUAUaCAUa -3'
miRNA:   3'- gaAAUUGUGGAUUcGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 73853 0.75 0.995994
Target:  5'- uUUUAACACaUAAGC-AUAUACUCACu -3'
miRNA:   3'- gAAAUUGUGgAUUCGaUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 75148 0.79 0.969545
Target:  5'- ---aAAgGgUUAAGCUAUAUACCCACa -3'
miRNA:   3'- gaaaUUgUgGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 75824 0.71 0.999876
Target:  5'- cCUUUAACACCUAAauuaUAUAUACCg-- -3'
miRNA:   3'- -GAAAUUGUGGAUUcg--AUAUAUGGgug -5'
28261 3' -43 NC_005902.1 + 75904 0.9 0.542492
Target:  5'- cCUUUAAUACCUAAGCUAUAUACaaGCa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 76087 0.91 0.510078
Target:  5'- cCUUUAAgACCUAAGCUAUAUAUUCACu -3'
miRNA:   3'- -GAAAUUgUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 76205 0.76 0.994445
Target:  5'- uUUUAAUACUUAAGCUAUAUACaaAUg -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 76657 0.73 0.99913
Target:  5'- cCUUUAACAUCUAAGUUugcUAUGCUUAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAu--AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 76783 0.67 1
Target:  5'- ----uACAUUUAGGCUAUAUACaaACa -3'
miRNA:   3'- gaaauUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 76873 0.76 0.991247
Target:  5'- uCUUUAAUAUCUAAGCUAUAUAUaaaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGgg--UG- -5'
28261 3' -43 NC_005902.1 + 77101 0.83 0.87477
Target:  5'- --cUAACACUUAAGCuUAUAUACUCACu -3'
miRNA:   3'- gaaAUUGUGGAUUCG-AUAUAUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.