miRNA display CGI


Results 161 - 180 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 78212 0.82 0.904394
Target:  5'- uCUUUAACAUCUAAGCUAUAUACg--- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 78860 0.8 0.93509
Target:  5'- uUUUAACcCUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- gAAAUUGuGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 80736 0.93 0.399469
Target:  5'- uCUUUAACACCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 81054 0.67 1
Target:  5'- uUUUAACAUCUAAGCUAUAcaauUAagCAUa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAU----AUggGUG- -5'
28261 3' -43 NC_005902.1 + 81112 0.77 0.986748
Target:  5'- -cUUAACcCUUAAGUUAUAUACUCACu -3'
miRNA:   3'- gaAAUUGuGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 81173 0.75 0.995994
Target:  5'- cCUUUAAUACCUAccuaAGCUAUAUAUgaGCg -3'
miRNA:   3'- -GAAAUUGUGGAU----UCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 81285 0.78 0.975556
Target:  5'- -gUUAACAUCUAAGCUAUAUACaaAUa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 81838 0.87 0.69853
Target:  5'- cCUUUAACACCUAAGCUAUAUAaaCAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUggGUg -5'
28261 3' -43 NC_005902.1 + 83736 0.7 0.999972
Target:  5'- uUUUAACACUUAAGUgAUAUACaaACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGaUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 84934 0.77 0.986748
Target:  5'- cCUUUAACACUUAAGCaAUAUACaaACg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGaUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 85057 0.92 0.46819
Target:  5'- uUUUAACAUCUAGGCUAUAUACUUACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 85275 0.66 1
Target:  5'- gCUUUAACuCUUAAgGCUuauAUGUGCUCAUg -3'
miRNA:   3'- -GAAAUUGuGGAUU-CGA---UAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 85342 0.83 0.840979
Target:  5'- cCUUUAACAUCUAAGCUAUAUACaaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 85618 0.81 0.929526
Target:  5'- cCUUUAACcCUUAAGCUAUAUACUgACu -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUGGgUG- -5'
28261 3' -43 NC_005902.1 + 85907 0.83 0.849792
Target:  5'- cCUUUAACAUCUAAGCUAUAUAUgaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 86026 0.74 0.998045
Target:  5'- -aUUAACACCUAAGCUAUAUua-UAUa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAuggGUG- -5'
28261 3' -43 NC_005902.1 + 86392 0.89 0.597857
Target:  5'- uCUUUAACACCUAAGCUAUAUACaagugaGCa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGgg----UG- -5'
28261 3' -43 NC_005902.1 + 86444 0.83 0.866695
Target:  5'- uCUUUAACACUUAAGCUAUAUACaaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 87126 0.76 0.993505
Target:  5'- -gUUAAUAUUUAAGCUAUAUAUgCACu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 87363 0.8 0.94536
Target:  5'- -cUUAAUACCUAAGCUAuauaUAUACUCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAU----AUAUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.