miRNA display CGI


Results 101 - 120 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 140924 0.85 0.783657
Target:  5'- --aUAACACCUAAGCUAUAUACgaACa -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 140869 0.93 0.399469
Target:  5'- uCUUUAACAUCUAAGCUGUAUACUCAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUg -5'
28261 3' -43 NC_005902.1 + 140055 0.74 0.998388
Target:  5'- aUUUAAUACUUAAGCUAUAUAUuuGu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUg -5'
28261 3' -43 NC_005902.1 + 139697 0.74 0.997641
Target:  5'- -gUUAAUACCUAGGCUAUAUAUa--- -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 139069 0.72 0.999728
Target:  5'- aUUUAAagaaUUAAGCUAUAUACUCACu -3'
miRNA:   3'- gAAAUUgug-GAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 138777 0.72 0.999838
Target:  5'- ---aAACAUCUAAGCUAUAUACa--- -3'
miRNA:   3'- gaaaUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 137900 0.8 0.950069
Target:  5'- -gUUAACAUCUAAGCUAUAUAUgUGCu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 137776 0.84 0.831937
Target:  5'- uUUUAACACCUAAGCUAUAUAUaCAa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGgGUg -5'
28261 3' -43 NC_005902.1 + 137753 0.84 0.822677
Target:  5'- cCUUUAACACUUAAGCUAUAUAUaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 137436 0.75 0.99717
Target:  5'- uUUUAACAUCUAAGCUAUAcACUgAUu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUaUGGgUG- -5'
28261 3' -43 NC_005902.1 + 137434 0.81 0.917533
Target:  5'- uUUUAACACCUAAaCUAUAUAUUCACu -3'
miRNA:   3'- gAAAUUGUGGAUUcGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 136893 0.71 0.999906
Target:  5'- aUUUAACACCcAAGUUAUAUAUaaACa -3'
miRNA:   3'- gAAAUUGUGGaUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 136570 0.9 0.520798
Target:  5'- cCUUUAACACCUAAGUUAUAUACUUAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 136047 0.94 0.354503
Target:  5'- cCUUUAACuCCUAAGCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 135991 0.73 0.998925
Target:  5'- uUUUAACACCUAAGU---AUAUUCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGauaUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 135960 0.8 0.9545
Target:  5'- -gUUAAUACCUAAGCUAUAUACaagugaGCa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGgg----UG- -5'
28261 3' -43 NC_005902.1 + 135893 0.81 0.911106
Target:  5'- uCUUUAACAUUUAAGCUAUGUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 135814 0.86 0.73129
Target:  5'- uCUUUAACACCUAAGCUAUAUAUa-GCu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 135545 0.72 0.999652
Target:  5'- cCUUUAACACCUAAaCUAgAUACaCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUaUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 134580 0.82 0.8974
Target:  5'- cCUUUAACAUUUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.