miRNA display CGI


Results 121 - 140 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 134328 0.67 1
Target:  5'- cCUUUAACAUUUAAGC-AUAUACaaaugagCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGaUAUAUGg------GUG- -5'
28261 3' -43 NC_005902.1 + 134163 0.82 0.882583
Target:  5'- aUUUAACAUCUAAGCUAuaUAUACUUACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAU--AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 134050 0.68 0.999999
Target:  5'- -aUUAACuCCUAAGUUAUAUACaaAUg -3'
miRNA:   3'- gaAAUUGuGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 133836 0.85 0.783657
Target:  5'- cCUUUAACACCUAAGUgAUAUACCUg- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGaUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 133676 0.89 0.586688
Target:  5'- uCUUUAACACCUAAGCUAUAUACaaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 133624 0.8 0.940368
Target:  5'- -gUUAACACUUAAGCUAUAUACaUACu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 131964 0.72 0.999728
Target:  5'- -gUUAACACCUAAaCUAUAUAUCUg- -3'
miRNA:   3'- gaAAUUGUGGAUUcGAUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 131666 0.84 0.813208
Target:  5'- cCUUUAACACCUAAGCUAUAcAUaCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUaUGgGUG- -5'
28261 3' -43 NC_005902.1 + 131060 0.66 1
Target:  5'- aCUUUuuaAACAUUUAAGC-AUAUAUUCACu -3'
miRNA:   3'- -GAAA---UUGUGGAUUCGaUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 130956 0.72 0.999789
Target:  5'- cCUUUAAUACUUAAGUUAUAUACa--- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 128774 0.92 0.437965
Target:  5'- cCUUUAACACCUAAGCUAUAUACUUg- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 127780 0.87 0.665166
Target:  5'- uUUUAACACUgAAGCUAUAUACUCACu -3'
miRNA:   3'- gAAAUUGUGGaUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 127717 0.67 1
Target:  5'- --aUAACGCCUuggGAGUUAaacUGUACUUACu -3'
miRNA:   3'- gaaAUUGUGGA---UUCGAU---AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 127472 0.66 1
Target:  5'- uCUUUAACACaUAAGCUAUAUAg---- -3'
miRNA:   3'- -GAAAUUGUGgAUUCGAUAUAUgggug -5'
28261 3' -43 NC_005902.1 + 127380 0.66 1
Target:  5'- cCUUUAAgacUACUUGuuCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUU---GUGGAUucGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 125545 0.75 0.995271
Target:  5'- -gUUAACAUUUAAGCUAUAUAUaCACu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 124391 0.79 0.969545
Target:  5'- uCUUUAACAUCUAAGCUA--UACUCAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUauAUGGGUg -5'
28261 3' -43 NC_005902.1 + 122904 0.69 0.999995
Target:  5'- uUUUAACAUCUAAGUgAUAUACUUg- -3'
miRNA:   3'- gAAAUUGUGGAUUCGaUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 122769 0.66 1
Target:  5'- cCUUUAACcUUUAAGCUAUAUGaaCAUa -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUggGUG- -5'
28261 3' -43 NC_005902.1 + 122644 0.87 0.676335
Target:  5'- uCUUUAACAUCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.