miRNA display CGI


Results 141 - 160 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 122523 0.86 0.73129
Target:  5'- gUUUAACcUCUAGGUUAUAUACCCACu -3'
miRNA:   3'- gAAAUUGuGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 120247 1.03 0.139577
Target:  5'- cCUUUAACACCUGAGCUAUAUGCUCAUg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 119010 0.9 0.542492
Target:  5'- cCUUUAACuCCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 118651 0.86 0.709533
Target:  5'- uUUUAACACUUAAGCUAUAUACaCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 118522 0.72 0.999728
Target:  5'- uUUUAAUcUUUGAGCUAUAUACUCAUu -3'
miRNA:   3'- gAAAUUGuGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 118435 0.68 1
Target:  5'- gCUUUcAACAUCUAAGCUAUAUAaaugaGCu -3'
miRNA:   3'- -GAAA-UUGUGGAUUCGAUAUAUggg--UG- -5'
28261 3' -43 NC_005902.1 + 118296 0.96 0.305422
Target:  5'- uUUUAACACUUAAGCUAUAUACUCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 117937 0.77 0.982879
Target:  5'- --cUAcCACCUAAGUUAUAUGCUUACu -3'
miRNA:   3'- gaaAUuGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 117731 0.82 0.890128
Target:  5'- cCUUUAACAUCUAAGCUAUAUGCa--- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 117046 0.76 0.989907
Target:  5'- uUUUAAUACUUAAGCUAUAUAUUUAUu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 116945 0.8 0.93509
Target:  5'- cCUUUAACACCUAGGUUAUAUAaaCAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUggGUg -5'
28261 3' -43 NC_005902.1 + 116830 0.82 0.8974
Target:  5'- cCUUUAACAUCUAAGUUAUAUACaCCu- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUG-GGug -5'
28261 3' -43 NC_005902.1 + 116634 0.85 0.783657
Target:  5'- uUUUAACACCUAAGCUAUAUACa--- -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 115828 0.66 1
Target:  5'- gCUUUAuCACCUAaauuuuuacaaGGCUAcgguuUACCUACu -3'
miRNA:   3'- -GAAAUuGUGGAU-----------UCGAUau---AUGGGUG- -5'
28261 3' -43 NC_005902.1 + 114813 0.72 0.999652
Target:  5'- cCUUUAACACUUAGGUUAUAUAUg--- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 114546 0.86 0.73129
Target:  5'- cCUUUAACACCUAGGCUAUAUAaaCAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUggGUg -5'
28261 3' -43 NC_005902.1 + 114358 0.82 0.8974
Target:  5'- --cUAACACCUAAGCUAUAUACaaAUa -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 113786 0.72 0.999789
Target:  5'- cCUUUAACAaCUAAGCUAUAUAUacaaACa -3'
miRNA:   3'- -GAAAUUGUgGAUUCGAUAUAUGgg--UG- -5'
28261 3' -43 NC_005902.1 + 113604 0.74 0.99868
Target:  5'- cCUUUAAUAUCUAAGC-AUAUACUUAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGaUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 111392 0.77 0.988411
Target:  5'- gCUUUAACaccACCUAAGUUAUAUACUUAa -3'
miRNA:   3'- -GAAAUUG---UGGAUUCGAUAUAUGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.