miRNA display CGI


Results 121 - 140 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 146428 0.92 0.457994
Target:  5'- cCUUUAACACCUAAGCUAuaauucacUAUGCUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAU--------AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 50045 0.91 0.478502
Target:  5'- cCUUUAACACCUAAGCUAUGUucauuugcuauGCUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUA-----------UGGGUG- -5'
28261 3' -43 NC_005902.1 + 169126 0.79 0.966173
Target:  5'- uCUUUAACAUUUAAGCUAUAUAgaCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUggGUG- -5'
28261 3' -43 NC_005902.1 + 141935 0.79 0.962546
Target:  5'- uCUUUAACAgCUAAaCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUgGAUUcGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 48112 0.79 0.958658
Target:  5'- cCUUUAACAUUUAAGCUAUAUACaaaugagCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGg------GUG- -5'
28261 3' -43 NC_005902.1 + 54052 0.89 0.575558
Target:  5'- cCUUUAACACCUAAGCUAUAUAUgaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 48255 0.87 0.665166
Target:  5'- cCUUUAACACUUAAGCUAUAUAUaCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 97438 0.87 0.68746
Target:  5'- cCUUUAACACCUAAGCUAUAcuUACUUAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAU--AUGGGUG- -5'
28261 3' -43 NC_005902.1 + 149800 0.86 0.752632
Target:  5'- uUUUAACACCUAAGUUAUGUACUauuCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGG---GUG- -5'
28261 3' -43 NC_005902.1 + 97177 0.85 0.773464
Target:  5'- cCUUUAACACCUAAGCUAUAUAUgaAUg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 116634 0.85 0.783657
Target:  5'- uUUUAACACCUAAGCUAUAUACa--- -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 170702 0.85 0.793687
Target:  5'- uCUUUAACACCUAAGCUAUAUAUgaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 88298 0.84 0.803541
Target:  5'- -aUUAACACCUAAGCUAUAUGCaaAUa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 42241 0.84 0.822677
Target:  5'- -cUUAACACCUAAGCUAUAUACaaAUg -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 85342 0.83 0.840979
Target:  5'- cCUUUAACAUCUAAGCUAUAUACaaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 167252 0.83 0.849792
Target:  5'- uUUUAACACCUAAGUUAUAUAUUCGu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUg -5'
28261 3' -43 NC_005902.1 + 114358 0.82 0.8974
Target:  5'- --cUAACACCUAAGCUAUAUACaaAUa -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 181228 0.82 0.904394
Target:  5'- cCUUUAACuCCUAAGUUAUAUACUUGCu -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 5650 0.81 0.929526
Target:  5'- cCUUUAACAaUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUgGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 63365 0.8 0.950069
Target:  5'- uCUUUAACAUCUcuAAGCUAUAcACUCACu -3'
miRNA:   3'- -GAAAUUGUGGA--UUCGAUAUaUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.