miRNA display CGI


Results 141 - 160 of 392 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 110913 0.72 0.999789
Target:  5'- cCUUUuAUACCUAAGCUAUAUAUg--- -3'
miRNA:   3'- -GAAAuUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 169551 0.72 0.999652
Target:  5'- -gUUAAUGCUUAAGCUAUAUACaUGCg -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 21169 0.79 0.966173
Target:  5'- cCUUUAACACUUAAGCUAUAUAUgaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 170850 0.79 0.962546
Target:  5'- cCUUUAACAUgUAAGCUAUAUACaaACu -3'
miRNA:   3'- -GAAAUUGUGgAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 166129 0.8 0.9545
Target:  5'- cCUUUAAUACUUAAGCUAUAUacauGCUCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUA----UGGGUG- -5'
28261 3' -43 NC_005902.1 + 63365 0.8 0.950069
Target:  5'- uCUUUAACAUCUcuAAGCUAUAcACUCACu -3'
miRNA:   3'- -GAAAUUGUGGA--UUCGAUAUaUGGGUG- -5'
28261 3' -43 NC_005902.1 + 36165 0.81 0.923674
Target:  5'- uUUUAACAUCUAAGCUAUAUAUaaACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 181228 0.82 0.904394
Target:  5'- cCUUUAACuCCUAAGUUAUAUACUUGCu -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 37260 0.82 0.8974
Target:  5'- -cUUAACACUUAAGCUAUAuacaUACCCGu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAU----AUGGGUg -5'
28261 3' -43 NC_005902.1 + 174464 0.83 0.87477
Target:  5'- uCUUUuuACAUCUAAGCUAUAUACUUACu -3'
miRNA:   3'- -GAAAu-UGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 81285 0.78 0.975556
Target:  5'- -gUUAACAUCUAAGCUAUAUACaaAUa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 69071 0.77 0.982879
Target:  5'- -gUUAACACCUAAGCUuaAUAUGCUUg- -3'
miRNA:   3'- gaAAUUGUGGAUUCGA--UAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 65754 0.73 0.999558
Target:  5'- cCUUUAACACCUGAaCUAUAUAUgaaugaaCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGg------GUG- -5'
28261 3' -43 NC_005902.1 + 37201 0.73 0.999301
Target:  5'- uUUUAAUACauauuUAAGCUAUAUAUUCACu -3'
miRNA:   3'- gAAAUUGUGg----AUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 163512 0.74 0.99868
Target:  5'- -aUUAACAUCUAAGCUAUAaACaaGCg -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUaUGggUG- -5'
28261 3' -43 NC_005902.1 + 86026 0.74 0.998045
Target:  5'- -aUUAACACCUAAGCUAUAUua-UAUa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAuggGUG- -5'
28261 3' -43 NC_005902.1 + 125545 0.75 0.995271
Target:  5'- -gUUAACAUUUAAGCUAUAUAUaCACu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 27664 0.75 0.995271
Target:  5'- -aUUAAUACCUAGGCUgcuAUAUACUUAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGA---UAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 163390 0.76 0.993505
Target:  5'- uUUUAACAUCUAAGCUAUAUAUgaAUg -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 1263 0.76 0.993505
Target:  5'- uCUUcAACACCUAGGCUAUAUAUaaAUg -3'
miRNA:   3'- -GAAaUUGUGGAUUCGAUAUAUGggUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.