miRNA display CGI


Results 161 - 180 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 162718 0.72 0.999652
Target:  5'- aUUUAccuuAUACCUAAGCUAcAUAUUCACu -3'
miRNA:   3'- gAAAU----UGUGGAUUCGAUaUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 24958 0.73 0.999558
Target:  5'- uCUUUAAUACCcGAGUcAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGaUUCGaUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 37201 0.73 0.999301
Target:  5'- uUUUAAUACauauuUAAGCUAUAUAUUCACu -3'
miRNA:   3'- gAAAUUGUGg----AUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 113604 0.74 0.99868
Target:  5'- cCUUUAAUAUCUAAGC-AUAUACUUAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGaUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 139697 0.74 0.997641
Target:  5'- -gUUAAUACCUAGGCUAUAUAUa--- -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 108903 0.75 0.995994
Target:  5'- uUUUAACAgCUAGGCUAUAUACaaAUa -3'
miRNA:   3'- gAAAUUGUgGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 36971 0.75 0.995271
Target:  5'- -----uUACCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- gaaauuGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 174974 0.76 0.994445
Target:  5'- --cUAACACUUAAGCUAUAUACaaAUg -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 117046 0.76 0.989907
Target:  5'- uUUUAAUACUUAAGCUAUAUAUUUAUu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 178798 0.71 0.999876
Target:  5'- --gUAGCACCUGAuaUuuuUAUACCUACu -3'
miRNA:   3'- gaaAUUGUGGAUUcgAu--AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 95588 0.71 0.999906
Target:  5'- -gUUAACAUCUAAGUUAUAUAUaCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 167157 0.95 0.337544
Target:  5'- cCUUUAACACCUAAGCUAUAUACUUAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUg -5'
28261 3' -43 NC_005902.1 + 142156 0.96 0.313228
Target:  5'- uCUUUAACACCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 45081 0.97 0.261724
Target:  5'- uUUUAACACCUAAGCUAUAUACUUACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 118435 0.68 1
Target:  5'- gCUUUcAACAUCUAAGCUAUAUAaaugaGCu -3'
miRNA:   3'- -GAAA-UUGUGGAUUCGAUAUAUggg--UG- -5'
28261 3' -43 NC_005902.1 + 161775 0.68 0.999999
Target:  5'- cCUUUAACACCUAAGgUGUcauugaugAUACaaaGCg -3'
miRNA:   3'- -GAAAUUGUGGAUUCgAUA--------UAUGgg-UG- -5'
28261 3' -43 NC_005902.1 + 12544 0.69 0.999995
Target:  5'- cCUUUAAUACCUAAaUUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 90609 0.7 0.99999
Target:  5'- -gUUAACACCUAAGCU---UGCUgAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAuauAUGGgUG- -5'
28261 3' -43 NC_005902.1 + 100156 0.7 0.99998
Target:  5'- cCUUUuuAUGCCUAAGUUAUAUACaaguaaaCACa -3'
miRNA:   3'- -GAAAu-UGUGGAUUCGAUAUAUGg------GUG- -5'
28261 3' -43 NC_005902.1 + 92007 0.7 0.999962
Target:  5'- aCUUUuuaAAUACCUAAGCUAUAUAUg--- -3'
miRNA:   3'- -GAAA---UUGUGGAUUCGAUAUAUGggug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.