Results 101 - 120 of 392 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28261 | 3' | -43 | NC_005902.1 | + | 118522 | 0.72 | 0.999728 |
Target: 5'- uUUUAAUcUUUGAGCUAUAUACUCAUu -3' miRNA: 3'- gAAAUUGuGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 131964 | 0.72 | 0.999728 |
Target: 5'- -gUUAACACCUAAaCUAUAUAUCUg- -3' miRNA: 3'- gaAAUUGUGGAUUcGAUAUAUGGGug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 135545 | 0.72 | 0.999652 |
Target: 5'- cCUUUAACACCUAAaCUAgAUACaCACa -3' miRNA: 3'- -GAAAUUGUGGAUUcGAUaUAUGgGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 177828 | 0.73 | 0.999558 |
Target: 5'- -aUUAACuuuGCCUAAGCUAUAUACaagugaGCa -3' miRNA: 3'- gaAAUUG---UGGAUUCGAUAUAUGgg----UG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 178178 | 0.73 | 0.999301 |
Target: 5'- uUUUAACACCUGAuaUA-AUACCUGCa -3' miRNA: 3'- gAAAUUGUGGAUUcgAUaUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 107921 | 0.71 | 0.999906 |
Target: 5'- cCUUUAuaaACuCUAAGCUAUAUACUUAUu -3' miRNA: 3'- -GAAAUug-UG-GAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 98940 | 0.7 | 0.999962 |
Target: 5'- cCUUUAACcCCUAAGCUAUAUAa---- -3' miRNA: 3'- -GAAAUUGuGGAUUCGAUAUAUgggug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 71324 | 0.69 | 0.999995 |
Target: 5'- -gUUAACAUCUAAGUUAUAUAUaaAUa -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 95408 | 0.69 | 0.999995 |
Target: 5'- cCUUUAACACCUAAaUUAUAUAUgaACa -3' miRNA: 3'- -GAAAUUGUGGAUUcGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 12827 | 0.69 | 0.999995 |
Target: 5'- cCUUUAACuCCUAAGUUAUAUAUaUAUa -3' miRNA: 3'- -GAAAUUGuGGAUUCGAUAUAUGgGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 175614 | 0.69 | 0.999993 |
Target: 5'- cCUUUAAUACgUAAGCcGUAUACaaACa -3' miRNA: 3'- -GAAAUUGUGgAUUCGaUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 145342 | 0.69 | 0.999993 |
Target: 5'- -----uUAUCUAAGCUAUAUACaCACu -3' miRNA: 3'- gaaauuGUGGAUUCGAUAUAUGgGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 36802 | 0.7 | 0.99999 |
Target: 5'- uUUUAACACUUAAGCUAUA----CACa -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUauggGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 174999 | 0.7 | 0.999986 |
Target: 5'- -gUUAAUA-CUAAGCUAUAUACUUAUu -3' miRNA: 3'- gaAAUUGUgGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 15479 | 0.7 | 0.999986 |
Target: 5'- -gUUAAUGCUUAAGCUAUAUACa--- -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGggug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 169979 | 0.7 | 0.99998 |
Target: 5'- -aUUAACccuuuAUCUAAGCUAUAUAUUCAUu -3' miRNA: 3'- gaAAUUG-----UGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 23833 | 0.7 | 0.99998 |
Target: 5'- aUUUAACAUUUAAGCUAUAUAUa--- -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGggug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 48224 | 0.7 | 0.999972 |
Target: 5'- cCUUUAACuCUUAAGCUAcauauuUGCUCACu -3' miRNA: 3'- -GAAAUUGuGGAUUCGAUau----AUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 11043 | 0.7 | 0.999962 |
Target: 5'- -gUUAACACUUAAGUUAUAUAUgaUCAUu -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUG--GGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 136893 | 0.71 | 0.999906 |
Target: 5'- aUUUAACACCcAAGUUAUAUAUaaACa -3' miRNA: 3'- gAAAUUGUGGaUUCGAUAUAUGggUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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