miRNA display CGI


Results 121 - 140 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 1412 0.74 0.998388
Target:  5'- uUUUAACcCCUAAGCUAUAUACg--- -3'
miRNA:   3'- gAAAUUGuGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 110189 0.74 0.998045
Target:  5'- cCUUUAAUACCUGAaCUAUAUACaaACg -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 139069 0.72 0.999728
Target:  5'- aUUUAAagaaUUAAGCUAUAUACUCACu -3'
miRNA:   3'- gAAAUUgug-GAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 130956 0.72 0.999789
Target:  5'- cCUUUAAUACUUAAGUUAUAUACa--- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 48508 0.72 0.999789
Target:  5'- -gUUAAUAUCUAAGCcAUAUACUUGCu -3'
miRNA:   3'- gaAAUUGUGGAUUCGaUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 174999 0.7 0.999986
Target:  5'- -gUUAAUA-CUAAGCUAUAUACUUAUu -3'
miRNA:   3'- gaAAUUGUgGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 15479 0.7 0.999986
Target:  5'- -gUUAAUGCUUAAGCUAUAUACa--- -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 169979 0.7 0.99998
Target:  5'- -aUUAACccuuuAUCUAAGCUAUAUAUUCAUu -3'
miRNA:   3'- gaAAUUG-----UGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 23833 0.7 0.99998
Target:  5'- aUUUAACAUUUAAGCUAUAUAUa--- -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 48224 0.7 0.999972
Target:  5'- cCUUUAACuCUUAAGCUAcauauuUGCUCACu -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUau----AUGGGUG- -5'
28261 3' -43 NC_005902.1 + 11043 0.7 0.999962
Target:  5'- -gUUAACACUUAAGUUAUAUAUgaUCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUG--GGUG- -5'
28261 3' -43 NC_005902.1 + 136893 0.71 0.999906
Target:  5'- aUUUAACACCcAAGUUAUAUAUaaACa -3'
miRNA:   3'- gAAAUUGUGGaUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 100106 0.74 0.998045
Target:  5'- -aUUAACACCUAAGCUAUAUua-UAUa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAuggGUG- -5'
28261 3' -43 NC_005902.1 + 98940 0.7 0.999962
Target:  5'- cCUUUAACcCCUAAGCUAUAUAa---- -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUgggug -5'
28261 3' -43 NC_005902.1 + 107921 0.71 0.999906
Target:  5'- cCUUUAuaaACuCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- -GAAAUug-UG-GAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 51970 0.71 0.999906
Target:  5'- -----uUACCUAAGCUAuaUAUACUCAUu -3'
miRNA:   3'- gaaauuGUGGAUUCGAU--AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 43846 0.71 0.999876
Target:  5'- uCUUUAACuuUUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGugGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 167322 0.72 0.999838
Target:  5'- --gUAAUACCUAcAGCUuguuUACCCAUa -3'
miRNA:   3'- gaaAUUGUGGAU-UCGAuau-AUGGGUG- -5'
28261 3' -43 NC_005902.1 + 160997 0.72 0.999838
Target:  5'- --gUAAUAUCUAAGCUAUAUACaaaUAUa -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGg--GUG- -5'
28261 3' -43 NC_005902.1 + 138777 0.72 0.999838
Target:  5'- ---aAACAUCUAAGCUAUAUACa--- -3'
miRNA:   3'- gaaaUUGUGGAUUCGAUAUAUGggug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.