Results 141 - 160 of 392 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28261 | 3' | -43 | NC_005902.1 | + | 157182 | 0.73 | 0.999301 |
Target: 5'- -aUUAAUACCUAAGUUAUAUACa--- -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGggug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 144986 | 0.73 | 0.999301 |
Target: 5'- cCUUUAAUACUaAAGCUAUAUACaugauCACu -3' miRNA: 3'- -GAAAUUGUGGaUUCGAUAUAUGg----GUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 167322 | 0.72 | 0.999838 |
Target: 5'- --gUAAUACCUAcAGCUuguuUACCCAUa -3' miRNA: 3'- gaaAUUGUGGAU-UCGAuau-AUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 43846 | 0.71 | 0.999876 |
Target: 5'- uCUUUAACuuUUAAGCUAUAUACaaACa -3' miRNA: 3'- -GAAAUUGugGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 51970 | 0.71 | 0.999906 |
Target: 5'- -----uUACCUAAGCUAuaUAUACUCAUu -3' miRNA: 3'- gaaauuGUGGAUUCGAU--AUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 107921 | 0.71 | 0.999906 |
Target: 5'- cCUUUAuaaACuCUAAGCUAUAUACUUAUu -3' miRNA: 3'- -GAAAUug-UG-GAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 98940 | 0.7 | 0.999962 |
Target: 5'- cCUUUAACcCCUAAGCUAUAUAa---- -3' miRNA: 3'- -GAAAUUGuGGAUUCGAUAUAUgggug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 136893 | 0.71 | 0.999906 |
Target: 5'- aUUUAACACCcAAGUUAUAUAUaaACa -3' miRNA: 3'- gAAAUUGUGGaUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 11043 | 0.7 | 0.999962 |
Target: 5'- -gUUAACACUUAAGUUAUAUAUgaUCAUu -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUG--GGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 48224 | 0.7 | 0.999972 |
Target: 5'- cCUUUAACuCUUAAGCUAcauauuUGCUCACu -3' miRNA: 3'- -GAAAUUGuGGAUUCGAUau----AUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 160997 | 0.72 | 0.999838 |
Target: 5'- --gUAAUAUCUAAGCUAUAUACaaaUAUa -3' miRNA: 3'- gaaAUUGUGGAUUCGAUAUAUGg--GUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 138777 | 0.72 | 0.999838 |
Target: 5'- ---aAACAUCUAAGCUAUAUACa--- -3' miRNA: 3'- gaaaUUGUGGAUUCGAUAUAUGggug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 178178 | 0.73 | 0.999301 |
Target: 5'- uUUUAACACCUGAuaUA-AUACCUGCa -3' miRNA: 3'- gAAAUUGUGGAUUcgAUaUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 177828 | 0.73 | 0.999558 |
Target: 5'- -aUUAACuuuGCCUAAGCUAUAUACaagugaGCa -3' miRNA: 3'- gaAAUUG---UGGAUUCGAUAUAUGgg----UG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 135545 | 0.72 | 0.999652 |
Target: 5'- cCUUUAACACCUAAaCUAgAUACaCACa -3' miRNA: 3'- -GAAAUUGUGGAUUcGAUaUAUGgGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 131964 | 0.72 | 0.999728 |
Target: 5'- -gUUAACACCUAAaCUAUAUAUCUg- -3' miRNA: 3'- gaAAUUGUGGAUUcGAUAUAUGGGug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 118522 | 0.72 | 0.999728 |
Target: 5'- uUUUAAUcUUUGAGCUAUAUACUCAUu -3' miRNA: 3'- gAAAUUGuGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 139069 | 0.72 | 0.999728 |
Target: 5'- aUUUAAagaaUUAAGCUAUAUACUCACu -3' miRNA: 3'- gAAAUUgug-GAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 130956 | 0.72 | 0.999789 |
Target: 5'- cCUUUAAUACUUAAGUUAUAUACa--- -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 48508 | 0.72 | 0.999789 |
Target: 5'- -gUUAAUAUCUAAGCcAUAUACUUGCu -3' miRNA: 3'- gaAAUUGUGGAUUCGaUAUAUGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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