miRNA display CGI


Results 1 - 20 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 105266 1.12 0.040835
Target:  5'- cCUUUAACACCUAAGCUAUAUACCCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 13184 1.08 0.071772
Target:  5'- cCUUUAACACCUAAGCUAUAUACCCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 71605 1.05 0.098963
Target:  5'- cCUUUAACACCUAAGCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 120247 1.03 0.139577
Target:  5'- cCUUUAACACCUGAGCUAUAUGCUCAUg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 41984 1.02 0.147684
Target:  5'- gUUUAACACCUAAGCUAUAUACUCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 23258 1.01 0.169857
Target:  5'- cCUUUAACACCUAAGCUAUAUAUUCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 99558 1.01 0.169857
Target:  5'- cCUUUAACACCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 143775 1.01 0.169857
Target:  5'- cCUUUAACACCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 184591 0.99 0.217326
Target:  5'- gCUUUAACACUUAAGCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 47185 0.98 0.235511
Target:  5'- cCUUUAACACUUAAGCUAUAUACUCACc -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 45081 0.97 0.261724
Target:  5'- uUUUAACACCUAAGCUAUAUACUUACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 142156 0.96 0.313228
Target:  5'- uCUUUAACACCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 47237 0.96 0.297767
Target:  5'- cCUUUAACACCUAAGCUAUAUACaCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 162391 0.96 0.305422
Target:  5'- cCUUUAACACCUAAGCUAcAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUaUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 118296 0.96 0.305422
Target:  5'- uUUUAACACUUAAGCUAUAUACUCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 167157 0.95 0.337544
Target:  5'- cCUUUAACACCUAAGCUAUAUACUUAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUg -5'
28261 3' -43 NC_005902.1 + 143020 0.95 0.337544
Target:  5'- cCUUUAACAUCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 34816 0.95 0.321183
Target:  5'- cCUUUAACACCUAAGUUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 145947 0.95 0.337544
Target:  5'- cCUUUAACAUCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 146735 0.94 0.381049
Target:  5'- cCUUUAACACCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.