miRNA display CGI


Results 61 - 80 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 5' -40.8 NC_005902.1 + 134368 0.71 0.999994
Target:  5'- -----aGUAUAUAGCUUAaGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 162572 0.71 0.999994
Target:  5'- -aGUaaGUAUAUAGaUUAGGUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCgAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 122672 0.71 0.999994
Target:  5'- -aGUgaGUGUAUAGCUUAGaGaUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUC-C-ACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 107830 0.71 0.999994
Target:  5'- -----cGUAUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 93877 0.71 0.999994
Target:  5'- -aGUaaGUAUAUAGCUUAGuUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 155244 0.71 0.999994
Target:  5'- -----cGUAUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 13436 0.71 0.999994
Target:  5'- -----aGUAUAUAGCUUAaGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 156763 0.72 0.999992
Target:  5'- -cGUUUGUAUAUGGCUUAGa------ -3'
miRNA:   3'- aaCAAACAUAUAUCGAAUCcacaauu -5'
28261 5' -40.8 NC_005902.1 + 6220 0.72 0.999983
Target:  5'- gUUGUgaaugaGUAUAUAGCUUAGuUGUUAAa -3'
miRNA:   3'- -AACAaa----CAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 75849 0.72 0.999976
Target:  5'- -cGUUUGUAUAUAGUUcAGGUaUUAAa -3'
miRNA:   3'- aaCAAACAUAUAUCGAaUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 181266 0.72 0.999976
Target:  5'- --aUUUGUAUAUAGCgUAGG-GUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGaAUCCaCAAUU- -5'
28261 5' -40.8 NC_005902.1 + 23449 0.72 0.999976
Target:  5'- -aGUgaGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCAcaauu -5'
28261 5' -40.8 NC_005902.1 + 36842 0.73 0.999967
Target:  5'- -----aGUAUAUAGCUUAGGUaUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 54081 0.73 0.999967
Target:  5'- ------aUAUAUAGUUUAGGUGUUAAc -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 137467 0.73 0.999938
Target:  5'- aUGUuuauUUGUGUAUAGUUUAGGUaUUAAc -3'
miRNA:   3'- aACA----AACAUAUAUCGAAUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 147629 0.73 0.999916
Target:  5'- -aGUgaGUGUAUAGCUUAGaUGUUAAu -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 32390 0.73 0.999916
Target:  5'- cUUGUUcGUAUAUAGUUUAaGUGUUAAa -3'
miRNA:   3'- -AACAAaCAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 114290 0.74 0.999887
Target:  5'- -----aGUAUGUAGUgUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGaAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 138853 0.74 0.999887
Target:  5'- -gGUgaGUAUAUAGCUUAaGUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 49144 0.74 0.999887
Target:  5'- cUUGUUUaUAUAUAaCUUGGGUGUUAAa -3'
miRNA:   3'- -AACAAAcAUAUAUcGAAUCCACAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.