miRNA display CGI


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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28262 3' -48.5 NC_005902.1 + 112983 0.71 0.97851
Target:  5'- aGGUaUACaaGGUAUACCagGUAUACg -3'
miRNA:   3'- aCCAcAUGgaCCAUAUGGagCAUAUG- -5'
28262 3' -48.5 NC_005902.1 + 73063 0.76 0.843967
Target:  5'- cUGGUaUACCUuGUAUACCUgGUAUACc -3'
miRNA:   3'- -ACCAcAUGGAcCAUAUGGAgCAUAUG- -5'
28262 3' -48.5 NC_005902.1 + 73036 1.1 0.016187
Target:  5'- cUGGUGUACCUGGUAUACCUCGUAUACc -3'
miRNA:   3'- -ACCACAUGGACCAUAUGGAGCAUAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.