Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28262 | 5' | -47.8 | NC_005902.1 | + | 73038 | 0.77 | 0.800584 |
|
Target: 5'- -gGUGUACCUGGUAuaccucguaUACCUGGUa--- -3' miRNA: 3'- aaCAUAUGGACCAU---------AUGGACCGaaag -5' |
|||||||
| 28262 | 5' | -47.8 | NC_005902.1 | + | 73072 | 1.07 | 0.02253 |
|
Target: 5'- cUUGUAUACCUGGUAUACCUGGCUUUCc -3' miRNA: 3'- -AACAUAUGGACCAUAUGGACCGAAAG- -5' |
|||||||
| 28262 | 5' | -47.8 | NC_005902.1 | + | 112661 | 0.69 | 0.995045 |
|
Target: 5'- -gGUGaGCCUGGUAauCCUGGUcaUCa -3' miRNA: 3'- aaCAUaUGGACCAUauGGACCGaaAG- -5' |
|||||||
| 28262 | 5' | -47.8 | NC_005902.1 | + | 112993 | 0.68 | 0.997887 |
|
Target: 5'- -gGUAUACCaGGUAUACgaGGUa--- -3' miRNA: 3'- aaCAUAUGGaCCAUAUGgaCCGaaag -5' |
|||||||
| 28262 | 5' | -47.8 | NC_005902.1 | + | 113164 | 0.7 | 0.986547 |
|
Target: 5'- -gGUAUuCCUGGUAUuCCUGGUg--- -3' miRNA: 3'- aaCAUAuGGACCAUAuGGACCGaaag -5' |
|||||||
| 28262 | 5' | -47.8 | NC_005902.1 | + | 113371 | 0.66 | 0.999682 |
|
Target: 5'- -gGUAUugCUGGUccuCCUGGUccUCc -3' miRNA: 3'- aaCAUAugGACCAuauGGACCGaaAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home