miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28263 5' -51 NC_005902.1 + 112674 0.67 0.99179
Target:  5'- ----aUCCUGG-UCAUCAaGGAauaagaGGACCu -3'
miRNA:   3'- aaauaAGGACCuAGUGGU-CCU------CCUGG- -5'
28263 5' -51 NC_005902.1 + 72701 0.68 0.979673
Target:  5'- ----cUCCagGGAgaccauuuuuaccaUCuauACCAGGAGGACCc -3'
miRNA:   3'- aaauaAGGa-CCU--------------AG---UGGUCCUCCUGG- -5'
28263 5' -51 NC_005902.1 + 73278 0.7 0.933276
Target:  5'- ---cUUCCaGGGUCACCAGGcauuccAGGAgCu -3'
miRNA:   3'- aaauAAGGaCCUAGUGGUCC------UCCUgG- -5'
28263 5' -51 NC_005902.1 + 72890 0.74 0.782614
Target:  5'- -----aCCaGGAaUACCAGGAGGACCn -3'
miRNA:   3'- aaauaaGGaCCUaGUGGUCCUCCUGG- -5'
28263 5' -51 NC_005902.1 + 73371 0.77 0.671567
Target:  5'- cUUAUUCCUugaugaccaGGAUUACCAGGcucacccauAGGGCCu -3'
miRNA:   3'- aAAUAAGGA---------CCUAGUGGUCC---------UCCUGG- -5'
28263 5' -51 NC_005902.1 + 72666 0.78 0.618931
Target:  5'- -----aCCaGGAggACCAGGAGGACCa -3'
miRNA:   3'- aaauaaGGaCCUagUGGUCCUCCUGG- -5'
28263 5' -51 NC_005902.1 + 72911 1.1 0.008017
Target:  5'- aUUUAUUCCUGGAUCACCAGGAGGACCu -3'
miRNA:   3'- -AAAUAAGGACCUAGUGGUCCUCCUGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.