miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 3' -40.1 NC_005902.1 + 28081 0.66 1
Target:  5'- --aACCCUUUAAuUCCUAAaGUa--- -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUgCAaacg -5'
28266 3' -40.1 NC_005902.1 + 33807 0.66 1
Target:  5'- -aUAUCCUgUAAcaCCUGugGUUUGa -3'
miRNA:   3'- gaAUGGGAaAUUuaGGAUugCAAACg -5'
28266 3' -40.1 NC_005902.1 + 89960 0.66 1
Target:  5'- --aACCCUUUAAcUCCUAAg----GCa -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUgcaaaCG- -5'
28266 3' -40.1 NC_005902.1 + 171085 0.66 1
Target:  5'- --aACCUUUUAA-UCCUAAgGUUUa- -3'
miRNA:   3'- gaaUGGGAAAUUuAGGAUUgCAAAcg -5'
28266 3' -40.1 NC_005902.1 + 36312 0.66 1
Target:  5'- --aACUCUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 17710 0.66 1
Target:  5'- -gUACCUUUUAAcUCC--ACG-UUGCg -3'
miRNA:   3'- gaAUGGGAAAUUuAGGauUGCaAACG- -5'
28266 3' -40.1 NC_005902.1 + 122851 0.7 1
Target:  5'- -gUACCUUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaAUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 175690 0.7 1
Target:  5'- -cUACCUUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaAUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 90001 0.7 1
Target:  5'- uUUACCCUUUAAcaCCUAA-GUUauauaUGCa -3'
miRNA:   3'- gAAUGGGAAAUUuaGGAUUgCAA-----ACG- -5'
28266 3' -40.1 NC_005902.1 + 153204 0.69 1
Target:  5'- -aUACCCUUUAAAccUUCUGcAUGUUuuuaaUGCa -3'
miRNA:   3'- gaAUGGGAAAUUU--AGGAU-UGCAA-----ACG- -5'
28266 3' -40.1 NC_005902.1 + 45100 0.68 1
Target:  5'- uUUACUUUUUAAuUCCUAAgGUaUUGUg -3'
miRNA:   3'- gAAUGGGAAAUUuAGGAUUgCA-AACG- -5'
28266 3' -40.1 NC_005902.1 + 120372 0.68 1
Target:  5'- ---cCCCUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaauGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 12173 0.68 1
Target:  5'- --aACUCUaUAAAUCCUAAgGUUUa- -3'
miRNA:   3'- gaaUGGGAaAUUUAGGAUUgCAAAcg -5'
28266 3' -40.1 NC_005902.1 + 24226 0.68 1
Target:  5'- -gUACCCUUUAAcuuuauGUCauuaaUGACGcUUUGUa -3'
miRNA:   3'- gaAUGGGAAAUU------UAGg----AUUGC-AAACG- -5'
28266 3' -40.1 NC_005902.1 + 137565 0.67 1
Target:  5'- --aACCUUUUGAAUCCUAAa----GCu -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUgcaaaCG- -5'
28266 3' -40.1 NC_005902.1 + 152913 0.67 1
Target:  5'- --cACCUUUUAAAUCCUAAgGc---- -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 133155 0.67 1
Target:  5'- uUUAUCCUUUAAcUCUUAAgGUaUUGUu -3'
miRNA:   3'- gAAUGGGAAAUUuAGGAUUgCA-AACG- -5'
28266 3' -40.1 NC_005902.1 + 184860 0.67 1
Target:  5'- --aACCCUUUAAcaCCUAAgcuguauauaugcuUGUUUGUa -3'
miRNA:   3'- gaaUGGGAAAUUuaGGAUU--------------GCAAACG- -5'
28266 3' -40.1 NC_005902.1 + 116773 0.67 1
Target:  5'- --cACCCUUUAAAUUCUAAgGc---- -3'
miRNA:   3'- gaaUGGGAAAUUUAGGAUUgCaaacg -5'
28266 3' -40.1 NC_005902.1 + 110166 0.73 0.999999
Target:  5'- -aUACCCUUUAAuUCCUAAgGcaUUGUc -3'
miRNA:   3'- gaAUGGGAAAUUuAGGAUUgCa-AACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.