miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 5' -42.9 NC_005902.1 + 109378 0.66 1
Target:  5'- uAUAUAAGCauagcaaaCUUAGaugUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUUCG--------GAAUCcuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 20153 0.66 1
Target:  5'- cGUAUAuAG-CUUAGGugUUAAAGGGUAu -3'
miRNA:   3'- -UAUAU-UCgGAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 76245 0.66 1
Target:  5'- aAUAUAuaaCUUAGGugUUAAAGGGUGa -3'
miRNA:   3'- -UAUAUucgGAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 24198 0.66 1
Target:  5'- uGUAUGAGCCUUAaGAUUUAAuGaGUAa -3'
miRNA:   3'- -UAUAUUCGGAAUcCUAAAUUuCcCAU- -5'
28266 5' -42.9 NC_005902.1 + 57268 0.66 1
Target:  5'- aGUAUAuAG-CUUAGGugUUAAAGGGUAu -3'
miRNA:   3'- -UAUAU-UCgGAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 137596 0.66 1
Target:  5'- aGUAUAAGCCUUAGGGUg--------- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAaauuucccau -5'
28266 5' -42.9 NC_005902.1 + 95553 0.66 1
Target:  5'- -gAUGAuGCCUUAaGAgUUAAAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUcCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 146697 0.66 1
Target:  5'- -aAUGAGCacccagauaUUAGGAUUUAAAGaGUAa -3'
miRNA:   3'- uaUAUUCGg--------AAUCCUAAAUUUCcCAU- -5'
28266 5' -42.9 NC_005902.1 + 13225 0.66 1
Target:  5'- cAUAUAuAG-CUUAGGugUUAAAGGGUAa -3'
miRNA:   3'- -UAUAU-UCgGAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 52206 0.67 1
Target:  5'- gGUAUAucaCUUAGGugUUAAAGGGUGa -3'
miRNA:   3'- -UAUAUucgGAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 36205 0.67 1
Target:  5'- aGUAUAAGCUUUAGG---UAAAGGa-- -3'
miRNA:   3'- -UAUAUUCGGAAUCCuaaAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 1760 0.67 1
Target:  5'- uAUAUAAGCUUUAuGGAUUaAAAGGuGa- -3'
miRNA:   3'- -UAUAUUCGGAAU-CCUAAaUUUCC-Cau -5'
28266 5' -42.9 NC_005902.1 + 69038 0.67 0.999999
Target:  5'- uGUAUAAGaCUUAGGAaUUAAAuGGUAu -3'
miRNA:   3'- -UAUAUUCgGAAUCCUaAAUUUcCCAU- -5'
28266 5' -42.9 NC_005902.1 + 81139 0.67 1
Target:  5'- aAUAcAAcCCUUAGGAUUUAAAGGa-- -3'
miRNA:   3'- -UAUaUUcGGAAUCCUAAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 97541 0.67 0.999999
Target:  5'- cAUAUAAGCCUcGGGGUUUAAAu---- -3'
miRNA:   3'- -UAUAUUCGGAaUCCUAAAUUUcccau -5'
28266 5' -42.9 NC_005902.1 + 87103 0.67 0.999999
Target:  5'- uUAUAuAG-CUUAGGggUUAAAGGGUu -3'
miRNA:   3'- uAUAU-UCgGAAUCCuaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 80769 0.67 0.999999
Target:  5'- -aGUGAGUggguauauagCUUAGGugUUAAAGGGUAa -3'
miRNA:   3'- uaUAUUCG----------GAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 71393 0.67 1
Target:  5'- -aGUAccaCCUUAGGAUUUAAAaGGUAa -3'
miRNA:   3'- uaUAUuc-GGAAUCCUAAAUUUcCCAU- -5'
28266 5' -42.9 NC_005902.1 + 96036 0.67 1
Target:  5'- cAUAUAuaaCUUAGGugUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUucgGAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 167292 0.67 0.999999
Target:  5'- uGUAUAuaaCUUAGGugUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUucgGAAUCCuaAAUUUCCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.