miRNA display CGI


Results 1 - 20 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 5' -42.9 NC_005902.1 + 42558 1.06 0.074697
Target:  5'- cAUAUAAGCCUUAGGAUUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 139785 1.06 0.076961
Target:  5'- uAUAUAAGCCUUAGGAUUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 184559 1.06 0.081689
Target:  5'- cAUAUAAGCCUUAGGAUUUAAAGGGUAc -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 90585 1.03 0.119829
Target:  5'- uGUAUAAGCCUUAGGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 50392 1.02 0.127004
Target:  5'- cAUAUAAGCCUUAGGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 168402 1.02 0.138513
Target:  5'- aGUAUAAGCCUUAGGGUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 65669 1.01 0.142558
Target:  5'- aGUAUAAGCCUUAGGAUUUAAAGGGg- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCau -5'
28266 5' -42.9 NC_005902.1 + 55098 1.01 0.150973
Target:  5'- aGUAUAAGCUUUAGGAUUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 157113 1 0.164442
Target:  5'- aGUAUAAGCUUUAGGAUUUAAAGGGUAc -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 49630 0.94 0.340154
Target:  5'- uAUAUAAGCCUUAGGggUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCuaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 78669 0.93 0.357513
Target:  5'- aGUAUAAGCCcUAGGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGaAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 43834 0.93 0.384695
Target:  5'- ---cAAGCCUUAGGAUUUAAAGGGUu -3'
miRNA:   3'- uauaUUCGGAAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 52480 0.93 0.384695
Target:  5'- aAUAUAAGCCcUAGGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGaAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 46298 0.93 0.384695
Target:  5'- aGUAUAAGCCUUAGGAUUUAAAGGa-- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 1525 0.93 0.384695
Target:  5'- aGUAUAAGCCUUAGGAUUUAAAGGa-- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 85765 0.93 0.384695
Target:  5'- aGUAUAAGCCUUAGGAUUUAAAGGa-- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 10348 0.92 0.41321
Target:  5'- cGUAUAAGCCUUAGGAUUUAAAaGGUAg -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUcCCAU- -5'
28266 5' -42.9 NC_005902.1 + 22594 0.92 0.41321
Target:  5'- uUAUAuAGCCUUAGGAUUUAAAGGGUu -3'
miRNA:   3'- uAUAU-UCGGAAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 33126 0.91 0.442993
Target:  5'- aGUAUAAGCCUUAGGAUUUAAAaGGUGa -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUcCCAU- -5'
28266 5' -42.9 NC_005902.1 + 63187 0.91 0.473948
Target:  5'- aAUAUAAGCCUUAGGAUUUAAAaGGUAc -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUcCCAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.