miRNA display CGI


Results 1 - 20 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 5' -42.9 NC_005902.1 + 1525 0.93 0.384695
Target:  5'- aGUAUAAGCCUUAGGAUUUAAAGGa-- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 1760 0.67 1
Target:  5'- uAUAUAAGCUUUAuGGAUUaAAAGGuGa- -3'
miRNA:   3'- -UAUAUUCGGAAU-CCUAAaUUUCC-Cau -5'
28266 5' -42.9 NC_005902.1 + 5290 0.69 0.999981
Target:  5'- -gAUAAcaCCUUAGGAaUUAAGGGGUu -3'
miRNA:   3'- uaUAUUc-GGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 8673 0.78 0.967935
Target:  5'- uGUAUAAGCCaUAaGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGaAUcCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 10103 0.7 0.999932
Target:  5'- -gAUGAuaCCUUAGGAgUUAAAGGGUu -3'
miRNA:   3'- uaUAUUc-GGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 10348 0.92 0.41321
Target:  5'- cGUAUAAGCCUUAGGAUUUAAAaGGUAg -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUcCCAU- -5'
28266 5' -42.9 NC_005902.1 + 12217 0.85 0.763314
Target:  5'- aAUAUGAGCUUUAGaAUUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUUCGGAAUCcUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 12702 0.78 0.964376
Target:  5'- aGUAUAAGCCUUAaGAUUUAAcGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUcCUAAAUUuCCCAu -5'
28266 5' -42.9 NC_005902.1 + 12863 0.69 0.999993
Target:  5'- uGUAUAuaaCUUAGGAgUUAAGGGGUu -3'
miRNA:   3'- -UAUAUucgGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 13225 0.66 1
Target:  5'- cAUAUAuAG-CUUAGGugUUAAAGGGUAa -3'
miRNA:   3'- -UAUAU-UCgGAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 14903 0.68 0.999998
Target:  5'- uAUAUAAGCCUUAaaAUUUAAAGGa-- -3'
miRNA:   3'- -UAUAUUCGGAAUccUAAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 15403 0.75 0.994214
Target:  5'- aGUGUAAGCCUUAGGGUUUAAc----- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUucccau -5'
28266 5' -42.9 NC_005902.1 + 17682 0.9 0.484506
Target:  5'- uAUAUAAGCCUUAGGGUUUAAAGGa-- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 20153 0.66 1
Target:  5'- cGUAUAuAG-CUUAGGugUUAAAGGGUAu -3'
miRNA:   3'- -UAUAU-UCgGAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 22594 0.92 0.41321
Target:  5'- uUAUAuAGCCUUAGGAUUUAAAGGGUu -3'
miRNA:   3'- uAUAU-UCGGAAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 24198 0.66 1
Target:  5'- uGUAUGAGCCUUAaGAUUUAAuGaGUAa -3'
miRNA:   3'- -UAUAUUCGGAAUcCUAAAUUuCcCAU- -5'
28266 5' -42.9 NC_005902.1 + 27846 0.73 0.998756
Target:  5'- uAUAUGAGUgaacacagcaaacaUUAGGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGg-------------AAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 31325 0.71 0.99984
Target:  5'- uGUAUAAGCUUUAGGAUUUAAGc---- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUcccau -5'
28266 5' -42.9 NC_005902.1 + 33126 0.91 0.442993
Target:  5'- aGUAUAAGCCUUAGGAUUUAAAaGGUGa -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUcCCAU- -5'
28266 5' -42.9 NC_005902.1 + 34674 0.86 0.674969
Target:  5'- aGUAUAAGCUUUAGGAUUUAAAGGa-- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCcau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.