miRNA display CGI


Results 1 - 20 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 5' -42.9 NC_005902.1 + 139785 1.06 0.076961
Target:  5'- uAUAUAAGCCUUAGGAUUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 82155 0.86 0.708771
Target:  5'- gGUAUAAaCUUUAGGAUUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUUcGGAAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 163489 0.82 0.876596
Target:  5'- aGUAUA-GCCUUAGGAUUUAAAGGa-- -3'
miRNA:   3'- -UAUAUuCGGAAUCCUAAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 13225 0.66 1
Target:  5'- cAUAUAuAG-CUUAGGugUUAAAGGGUAa -3'
miRNA:   3'- -UAUAU-UCgGAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 168402 1.02 0.138513
Target:  5'- aGUAUAAGCCUUAGGGUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 65669 1.01 0.142558
Target:  5'- aGUAUAAGCCUUAGGAUUUAAAGGGg- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCau -5'
28266 5' -42.9 NC_005902.1 + 43834 0.93 0.384695
Target:  5'- ---cAAGCCUUAGGAUUUAAAGGGUu -3'
miRNA:   3'- uauaUUCGGAAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 52480 0.93 0.384695
Target:  5'- aAUAUAAGCCcUAGGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGaAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 63187 0.91 0.473948
Target:  5'- aAUAUAAGCCUUAGGAUUUAAAaGGUAc -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUcCCAU- -5'
28266 5' -42.9 NC_005902.1 + 34674 0.86 0.674969
Target:  5'- aGUAUAAGCUUUAGGAUUUAAAGGa-- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 158177 0.88 0.606497
Target:  5'- aGUAUAAGCCUUAaGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUcCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 33126 0.91 0.442993
Target:  5'- aGUAUAAGCCUUAGGAUUUAAAaGGUGa -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUcCCAU- -5'
28266 5' -42.9 NC_005902.1 + 184559 1.06 0.081689
Target:  5'- cAUAUAAGCCUUAGGAUUUAAAGGGUAc -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 95341 0.88 0.617913
Target:  5'- uGUAUAAGCCUUAGGAUUUAAAuGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUcCCAu -5'
28266 5' -42.9 NC_005902.1 + 90585 1.03 0.119829
Target:  5'- uGUAUAAGCCUUAGGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 10348 0.92 0.41321
Target:  5'- cGUAUAAGCCUUAGGAUUUAAAaGGUAg -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUcCCAU- -5'
28266 5' -42.9 NC_005902.1 + 149727 0.86 0.674969
Target:  5'- uGUAUAAGCCUUAGGAUUUAAAGaGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCcCAu -5'
28266 5' -42.9 NC_005902.1 + 161885 0.82 0.868437
Target:  5'- aGUAUGAGCCUU-GGAUUUAAuGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAuCCUAAAUUuCCCAu -5'
28266 5' -42.9 NC_005902.1 + 50392 1.02 0.127004
Target:  5'- cAUAUAAGCCUUAGGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 78669 0.93 0.357513
Target:  5'- aGUAUAAGCCcUAGGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGaAUCCUAAAUUUCCCAu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.