miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28267 3' -44.5 NC_005902.1 + 1144 0.7 0.999827
Target:  5'- aACCcUUUAAgACCUAAGCUGUauACa -3'
miRNA:   3'- gUGGaAAAUUgUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 1406 0.75 0.98672
Target:  5'- uCACCuUUUUAACcCCUAAGCUAuauacgaaUGAGCa -3'
miRNA:   3'- -GUGG-AAAAUUGuGGGUUCGAU--------ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 3073 0.71 0.998887
Target:  5'- aACgaUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGgaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 3360 0.66 0.999999
Target:  5'- cUAUCUUUUAguuuuuaaaggguuACACCUAAGCUAU--ACa -3'
miRNA:   3'- -GUGGAAAAU--------------UGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 4194 0.7 0.999827
Target:  5'- aACCUUUUAAUAUUUAAGCUAUa--- -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 5997 0.66 0.999999
Target:  5'- aUACuCUUUUAACAaCCGAGCUGUu--- -3'
miRNA:   3'- -GUG-GAAAAUUGUgGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 8412 0.69 0.999867
Target:  5'- uCACUUUUUAACACCUAAaCUAUauACa -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUcGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 11404 0.7 0.999827
Target:  5'- uCACUcUUUAACACUUAAGCUAUauACu -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 11491 0.71 0.999416
Target:  5'- uUACUUUUUAAUAUCUAAGCUAUauACu -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 13181 0.76 0.969723
Target:  5'- aACCcUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 15148 0.73 0.994376
Target:  5'- aACCUUUUAACAUgUAAGCUAUauACu -3'
miRNA:   3'- gUGGAAAAUUGUGgGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 15409 0.73 0.997059
Target:  5'- aGCCUuaggguuuaacucUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGA-------------AAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 16462 0.72 0.997993
Target:  5'- uUACCUUUUAACACCUAAaCUAUacACu -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUcGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 16874 0.71 0.999271
Target:  5'- uUAUCcUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 16888 0.88 0.526974
Target:  5'- --aCUUUUAACAUCUAAGCUAUGAACa -3'
miRNA:   3'- gugGAAAAUUGUGGGUUCGAUACUUG- -5'
28267 3' -44.5 NC_005902.1 + 18747 0.73 0.994376
Target:  5'- uUACCcUUUAACACCUAAGUUAUauACa -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 18855 0.88 0.537717
Target:  5'- aACCUUUUAACACCUAAGCUAUauACg -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 21167 0.68 0.999958
Target:  5'- -uCCcUUUAACACUUAAGCUAuauaUGAAUa -3'
miRNA:   3'- guGGaAAAUUGUGGGUUCGAU----ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 21307 0.81 0.843363
Target:  5'- uUACCUUUUAACAUCUAAGCUAUauACu -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 22600 0.73 0.997059
Target:  5'- aGCCUUaggauuuaaagggUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGAA-------------AAUUGUGGGUUCGAUAcuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.