miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28267 3' -44.5 NC_005902.1 + 105941 0.88 0.537717
Target:  5'- aACCUUUUAACACCUAAGCUAUauACa -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 165943 0.79 0.924607
Target:  5'- aCACCUUUUAAUACUUAAGCUAUa--- -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 91856 0.78 0.930357
Target:  5'- aACCcUUUAACACCUAAGCUAUauACa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 86006 0.66 1
Target:  5'- aAUCUUucaauuuuuaaaggaUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGAA---------------AAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 52771 0.82 0.795867
Target:  5'- aACCUUUUAACACCUAAGUUauauaaaGUGAAUg -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGA-------UACUUG- -5'
28267 3' -44.5 NC_005902.1 + 50041 0.82 0.816055
Target:  5'- uUACCcUUUAACACCUAAGCUAUGuuCa -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUACuuG- -5'
28267 3' -44.5 NC_005902.1 + 116630 0.82 0.825368
Target:  5'- aACUUUUUAACACCUAAGCUAUauACa -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 174590 0.81 0.834474
Target:  5'- gACCgagUUAACACCUAAGCUAuauacgaaUGAGCa -3'
miRNA:   3'- gUGGaa-AAUUGUGGGUUCGAU--------ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 95761 0.8 0.884245
Target:  5'- aUACCUUUUAACACUUAAGCUAUa--- -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 163387 0.79 0.924607
Target:  5'- -cCCUUUUAACAUCUAAGCUAuauaUGAAUg -3'
miRNA:   3'- guGGAAAAUUGUGGGUUCGAU----ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 137772 0.8 0.8988
Target:  5'- aACUUUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 97174 0.8 0.868636
Target:  5'- aACCcUUUAACACCUAAGCUAuauaUGAAUg -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAU----ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 45076 0.87 0.570363
Target:  5'- uUACCUUUUAACACCUAAGCUAUauACu -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 54048 0.79 0.905669
Target:  5'- aUAUCcUUUAACACCUAAGCUAuauaUGAACa -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAU----ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 137431 0.83 0.745954
Target:  5'- uCACCUUUUAACAUCUAAGCUAUacACu -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 21307 0.81 0.843363
Target:  5'- uUACCUUUUAACAUCUAAGCUAUauACu -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 48378 0.79 0.918575
Target:  5'- aACCcUUUAACACCUAAGUUAUGuACu -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUACuUG- -5'
28267 3' -44.5 NC_005902.1 + 47234 0.78 0.930357
Target:  5'- aACCcUUUAACACCUAAGCUAUauACa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 154912 0.83 0.776937
Target:  5'- uCAUCUUUUAACAUCCAAGCUAUauACu -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 68931 0.82 0.816055
Target:  5'- uUACCUUUUAACACUUAAGCUAUauACa -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.