Results 1 - 20 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28267 | 3' | -44.5 | NC_005902.1 | + | 105941 | 0.88 | 0.537717 |
Target: 5'- aACCUUUUAACACCUAAGCUAUauACa -3' miRNA: 3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 165943 | 0.79 | 0.924607 |
Target: 5'- aCACCUUUUAAUACUUAAGCUAUa--- -3' miRNA: 3'- -GUGGAAAAUUGUGGGUUCGAUAcuug -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 91856 | 0.78 | 0.930357 |
Target: 5'- aACCcUUUAACACCUAAGCUAUauACa -3' miRNA: 3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 86006 | 0.66 | 1 |
Target: 5'- aAUCUUucaauuuuuaaaggaUUAACACCUAAGCUAUa--- -3' miRNA: 3'- gUGGAA---------------AAUUGUGGGUUCGAUAcuug -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 52771 | 0.82 | 0.795867 |
Target: 5'- aACCUUUUAACACCUAAGUUauauaaaGUGAAUg -3' miRNA: 3'- gUGGAAAAUUGUGGGUUCGA-------UACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 50041 | 0.82 | 0.816055 |
Target: 5'- uUACCcUUUAACACCUAAGCUAUGuuCa -3' miRNA: 3'- -GUGGaAAAUUGUGGGUUCGAUACuuG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 116630 | 0.82 | 0.825368 |
Target: 5'- aACUUUUUAACACCUAAGCUAUauACa -3' miRNA: 3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 174590 | 0.81 | 0.834474 |
Target: 5'- gACCgagUUAACACCUAAGCUAuauacgaaUGAGCa -3' miRNA: 3'- gUGGaa-AAUUGUGGGUUCGAU--------ACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 95761 | 0.8 | 0.884245 |
Target: 5'- aUACCUUUUAACACUUAAGCUAUa--- -3' miRNA: 3'- -GUGGAAAAUUGUGGGUUCGAUAcuug -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 163387 | 0.79 | 0.924607 |
Target: 5'- -cCCUUUUAACAUCUAAGCUAuauaUGAAUg -3' miRNA: 3'- guGGAAAAUUGUGGGUUCGAU----ACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 137772 | 0.8 | 0.8988 |
Target: 5'- aACUUUUUAACACCUAAGCUAUa--- -3' miRNA: 3'- gUGGAAAAUUGUGGGUUCGAUAcuug -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 97174 | 0.8 | 0.868636 |
Target: 5'- aACCcUUUAACACCUAAGCUAuauaUGAAUg -3' miRNA: 3'- gUGGaAAAUUGUGGGUUCGAU----ACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 45076 | 0.87 | 0.570363 |
Target: 5'- uUACCUUUUAACACCUAAGCUAUauACu -3' miRNA: 3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 54048 | 0.79 | 0.905669 |
Target: 5'- aUAUCcUUUAACACCUAAGCUAuauaUGAACa -3' miRNA: 3'- -GUGGaAAAUUGUGGGUUCGAU----ACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 137431 | 0.83 | 0.745954 |
Target: 5'- uCACCUUUUAACAUCUAAGCUAUacACu -3' miRNA: 3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 21307 | 0.81 | 0.843363 |
Target: 5'- uUACCUUUUAACAUCUAAGCUAUauACu -3' miRNA: 3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 48378 | 0.79 | 0.918575 |
Target: 5'- aACCcUUUAACACCUAAGUUAUGuACu -3' miRNA: 3'- gUGGaAAAUUGUGGGUUCGAUACuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 47234 | 0.78 | 0.930357 |
Target: 5'- aACCcUUUAACACCUAAGCUAUauACa -3' miRNA: 3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 154912 | 0.83 | 0.776937 |
Target: 5'- uCAUCUUUUAACAUCCAAGCUAUauACu -3' miRNA: 3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 68931 | 0.82 | 0.816055 |
Target: 5'- uUACCUUUUAACACUUAAGCUAUauACa -3' miRNA: 3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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