miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28268 3' -42.9 NC_005902.1 + 24157 1.11 0.05092
Target:  5'- cCCAUUAAAUCCAAGGCUCAUACUUGUu -3'
miRNA:   3'- -GGUAAUUUAGGUUCCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 139743 0.87 0.716748
Target:  5'- uCCuUUAAAUCCuAAGGCUUAUACUUGUu -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 184517 0.87 0.716748
Target:  5'- uCCuUUAAAUCCuAAGGCUUAUACUUGUu -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 107373 0.87 0.727537
Target:  5'- cCCuUUAAAUCCuAGGGCUUAUACUUGUu -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 161843 0.84 0.828093
Target:  5'- cUCAUUAAAUCuUAAGGCUCAUACaUGUg -3'
miRNA:   3'- -GGUAAUUUAG-GUUCCGAGUAUGaACA- -5'
28268 3' -42.9 NC_005902.1 + 27865 0.82 0.907863
Target:  5'- cCCuUUAAAUCuUAAGGCUUAUACUUGUu -3'
miRNA:   3'- -GGuAAUUUAG-GUUCCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 173340 0.81 0.932252
Target:  5'- cCCGUUAAAUCuUAAGGCUUAUACUg-- -3'
miRNA:   3'- -GGUAAUUUAG-GUUCCGAGUAUGAaca -5'
28268 3' -42.9 NC_005902.1 + 120373 0.79 0.964152
Target:  5'- cCCuUUAAAUCCuAAGGCUUAUACUUa- -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAGUAUGAAca -5'
28268 3' -42.9 NC_005902.1 + 100277 0.79 0.970887
Target:  5'- uCCuUUAAAUCCuAAGGCUUAUACUUa- -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAGUAUGAAca -5'
28268 3' -42.9 NC_005902.1 + 8631 0.78 0.979212
Target:  5'- cCCuUUAAAUCUuauGGCUUAUACUUGUu -3'
miRNA:   3'- -GGuAAUUUAGGuu-CCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 36242 0.78 0.981548
Target:  5'- --uUUAAAUCuUAAGGCUUAUACUUGUu -3'
miRNA:   3'- gguAAUUUAG-GUUCCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 152914 0.78 0.983682
Target:  5'- aCCuuUUAAAUCCuAAGGCUUAUACUUa- -3'
miRNA:   3'- -GGu-AAUUUAGG-UUCCGAGUAUGAAca -5'
28268 3' -42.9 NC_005902.1 + 90700 0.76 0.993834
Target:  5'- aCCAuUUAAAUCCuAAGGCUUAUACa--- -3'
miRNA:   3'- -GGU-AAUUUAGG-UUCCGAGUAUGaaca -5'
28268 3' -42.9 NC_005902.1 + 22554 0.76 0.995514
Target:  5'- uCCuUUAAAUCCuAAGGCU-AUACUUGUu -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAgUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 95457 0.76 0.995514
Target:  5'- cCCuUUAAAUCCuAAGGCUUAUACaaGUa -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAGUAUGaaCA- -5'
28268 3' -42.9 NC_005902.1 + 175692 0.76 0.995514
Target:  5'- aCCuuUUAAAUCCuAAGGCUUAUACgaGUa -3'
miRNA:   3'- -GGu-AAUUUAGG-UUCCGAGUAUGaaCA- -5'
28268 3' -42.9 NC_005902.1 + 143769 0.76 0.995514
Target:  5'- -gGUUAAGUCCuAAGGCUUAUACaaGUg -3'
miRNA:   3'- ggUAAUUUAGG-UUCCGAGUAUGaaCA- -5'
28268 3' -42.9 NC_005902.1 + 49590 0.75 0.997319
Target:  5'- -gAUUAAAcaCUAAGGCUUAUACUUGUu -3'
miRNA:   3'- ggUAAUUUa-GGUUCCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 135650 0.73 0.999339
Target:  5'- cCCuUUAAAUCCuAAGGCUUAUAUgagUGa -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAGUAUGa--ACa -5'
28268 3' -42.9 NC_005902.1 + 143484 0.73 0.999339
Target:  5'- cCCuUUAAAUCCuAAGGCUUAUAUgagUGa -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAGUAUGa--ACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.