miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28268 5' -41.7 NC_005902.1 + 24192 1.08 0.084761
Target:  5'- cUCACAUGUAUGAGCCUUAAGAUUUAAu -3'
miRNA:   3'- -AGUGUACAUACUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 149721 0.83 0.909833
Target:  5'- cUCACuUGUAUaAGCCUUAGGAUUUAAa -3'
miRNA:   3'- -AGUGuACAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 90579 0.78 0.991559
Target:  5'- cUUACuUGUAUaAGCCUUAGGAUUUAAa -3'
miRNA:   3'- -AGUGuACAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 95332 0.77 0.992742
Target:  5'- aCACucaauUGUAUaAGCCUUAGGAUUUAAa -3'
miRNA:   3'- aGUGu----ACAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 161881 0.77 0.992742
Target:  5'- -aACAaGUAUGAGCCUU-GGAUUUAAu -3'
miRNA:   3'- agUGUaCAUACUCGGAAuUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 110100 0.77 0.99552
Target:  5'- uUCACuUGUAUaAGCUUUAGGAUUUAAa -3'
miRNA:   3'- -AGUGuACAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 31319 0.76 0.996225
Target:  5'- cUCACuUGUAUaAGCUUUAGGAUUUAAg -3'
miRNA:   3'- -AGUGuACAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 139052 0.76 0.997814
Target:  5'- ---aGUGUAUaAGCCUUAAGAUUUAAa -3'
miRNA:   3'- agugUACAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 149798 0.75 0.998801
Target:  5'- -aACAaGUAUaAGCCUUAAGAUUUAAa -3'
miRNA:   3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 158173 0.75 0.998801
Target:  5'- -aACAaGUAUaAGCCUUAAGAUUUAAa -3'
miRNA:   3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 43812 0.74 0.999379
Target:  5'- aUACGUGUuugcuaugcucGUGcaAGCCUUAGGAUUUAAa -3'
miRNA:   3'- aGUGUACA-----------UAC--UCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 1521 0.74 0.999379
Target:  5'- -aACAaGUAUaAGCCUUAGGAUUUAAa -3'
miRNA:   3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 46294 0.74 0.999379
Target:  5'- -aACAaGUAUaAGCCUUAGGAUUUAAa -3'
miRNA:   3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 175731 0.74 0.999699
Target:  5'- -aACAaGUaAUGAGCUUUAGGAUUUAAa -3'
miRNA:   3'- agUGUaCA-UACUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 42268 0.73 0.999767
Target:  5'- cUCACuUGUAUaAGCCUUAGGAcUUAAc -3'
miRNA:   3'- -AGUGuACAUAcUCGGAAUUCUaAAUU- -5'
28268 5' -41.7 NC_005902.1 + 12699 0.73 0.999821
Target:  5'- -gACA-GUAUaAGCCUUAAGAUUUAAc -3'
miRNA:   3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 163485 0.72 0.999923
Target:  5'- -aACAaGUAU-AGCCUUAGGAUUUAAa -3'
miRNA:   3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 15399 0.72 0.999943
Target:  5'- -aACAaGUGUaAGCCUUAGGGUUUAAc -3'
miRNA:   3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 152948 0.72 0.99997
Target:  5'- aCGCuugauUGUAUauaAGCCUUAGGAUUUAAa -3'
miRNA:   3'- aGUGu----ACAUAc--UCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 100313 0.72 0.99997
Target:  5'- uUCACucuUGUAU-AGaCCUUAAGAUUUAAa -3'
miRNA:   3'- -AGUGu--ACAUAcUC-GGAAUUCUAAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.