miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28268 5' -41.7 NC_005902.1 + 1521 0.74 0.999379
Target:  5'- -aACAaGUAUaAGCCUUAGGAUUUAAa -3'
miRNA:   3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 8667 0.7 0.999995
Target:  5'- cUCAUcUGUAUaAGCCaUAAGAUUUAAa -3'
miRNA:   3'- -AGUGuACAUAcUCGGaAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 10342 0.71 0.999992
Target:  5'- uUUACucGUAUaAGCCUUAGGAUUUAAa -3'
miRNA:   3'- -AGUGuaCAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 12699 0.73 0.999821
Target:  5'- -gACA-GUAUaAGCCUUAAGAUUUAAc -3'
miRNA:   3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 15399 0.72 0.999943
Target:  5'- -aACAaGUGUaAGCCUUAGGGUUUAAc -3'
miRNA:   3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 17676 0.69 0.999999
Target:  5'- uUCACuuaUAUaAGCCUUAGGGUUUAAa -3'
miRNA:   3'- -AGUGuacAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 17723 0.66 1
Target:  5'- cCACGUugcgAUGAuGCCUUAGGAaUUAAa -3'
miRNA:   3'- aGUGUAca--UACU-CGGAAUUCUaAAUU- -5'
28268 5' -41.7 NC_005902.1 + 24192 1.08 0.084761
Target:  5'- cUCACAUGUAUGAGCCUUAAGAUUUAAu -3'
miRNA:   3'- -AGUGUACAUACUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 31319 0.76 0.996225
Target:  5'- cUCACuUGUAUaAGCUUUAGGAUUUAAg -3'
miRNA:   3'- -AGUGuACAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 33122 0.7 0.999998
Target:  5'- -aAUAaGUAUaAGCCUUAGGAUUUAAa -3'
miRNA:   3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 42268 0.73 0.999767
Target:  5'- cUCACuUGUAUaAGCCUUAGGAcUUAAc -3'
miRNA:   3'- -AGUGuACAUAcUCGGAAUUCUaAAUU- -5'
28268 5' -41.7 NC_005902.1 + 42328 0.66 1
Target:  5'- uUUGCAUcGU-UGAuaauGCCUUAAGAUUUAAa -3'
miRNA:   3'- -AGUGUA-CAuACU----CGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 42552 0.7 0.999995
Target:  5'- cUCACucaUAUaAGCCUUAGGAUUUAAa -3'
miRNA:   3'- -AGUGuacAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 43812 0.74 0.999379
Target:  5'- aUACGUGUuugcuaugcucGUGcaAGCCUUAGGAUUUAAa -3'
miRNA:   3'- aGUGUACA-----------UAC--UCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 46294 0.74 0.999379
Target:  5'- -aACAaGUAUaAGCCUUAGGAUUUAAa -3'
miRNA:   3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 46470 0.71 0.999992
Target:  5'- cUUACuUGUAUauaAGCCUUAGGGUUUAAc -3'
miRNA:   3'- -AGUGuACAUAc--UCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 50386 0.71 0.999992
Target:  5'- uUCACucaUAUaAGCCUUAGGAUUUAAa -3'
miRNA:   3'- -AGUGuacAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 65665 0.7 0.999998
Target:  5'- -aAUAaGUAUaAGCCUUAGGAUUUAAa -3'
miRNA:   3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5'
28268 5' -41.7 NC_005902.1 + 69154 0.66 1
Target:  5'- cUCACuUGUAU-AGUCUUAGGAaUUAAa -3'
miRNA:   3'- -AGUGuACAUAcUCGGAAUUCUaAAUU- -5'
28268 5' -41.7 NC_005902.1 + 85653 0.7 0.999998
Target:  5'- uUCACucaUAUaAGCCUUAGGAUUUAAc -3'
miRNA:   3'- -AGUGuacAUAcUCGGAAUUCUAAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.