Results 21 - 40 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 42552 | 0.7 | 0.999995 |
Target: 5'- cUCACucaUAUaAGCCUUAGGAUUUAAa -3' miRNA: 3'- -AGUGuacAUAcUCGGAAUUCUAAAUU- -5' |
|||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 8667 | 0.7 | 0.999995 |
Target: 5'- cUCAUcUGUAUaAGCCaUAAGAUUUAAa -3' miRNA: 3'- -AGUGuACAUAcUCGGaAUUCUAAAUU- -5' |
|||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 113106 | 0.7 | 0.999995 |
Target: 5'- cUACAUuuacuaGUAUaAGCCUUAAGGUUUAAa -3' miRNA: 3'- aGUGUA------CAUAcUCGGAAUUCUAAAUU- -5' |
|||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 46470 | 0.71 | 0.999992 |
Target: 5'- cUUACuUGUAUauaAGCCUUAGGGUUUAAc -3' miRNA: 3'- -AGUGuACAUAc--UCGGAAUUCUAAAUU- -5' |
|||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 10342 | 0.71 | 0.999992 |
Target: 5'- uUUACucGUAUaAGCCUUAGGAUUUAAa -3' miRNA: 3'- -AGUGuaCAUAcUCGGAAUUCUAAAUU- -5' |
|||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 50386 | 0.71 | 0.999992 |
Target: 5'- uUCACucaUAUaAGCCUUAGGAUUUAAa -3' miRNA: 3'- -AGUGuacAUAcUCGGAAUUCUAAAUU- -5' |
|||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 117037 | 0.71 | 0.999989 |
Target: 5'- -aGCAaauagGUAUaAGCCUUAGGAUUUAAa -3' miRNA: 3'- agUGUa----CAUAcUCGGAAUUCUAAAUU- -5' |
|||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 91209 | 0.71 | 0.999978 |
Target: 5'- cUCACuUGUAgaAGCCUUAgaGGAUUUAAa -3' miRNA: 3'- -AGUGuACAUacUCGGAAU--UCUAAAUU- -5' |
|||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 152948 | 0.72 | 0.99997 |
Target: 5'- aCGCuugauUGUAUauaAGCCUUAGGAUUUAAa -3' miRNA: 3'- aGUGu----ACAUAc--UCGGAAUUCUAAAUU- -5' |
|||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 100313 | 0.72 | 0.99997 |
Target: 5'- uUCACucuUGUAU-AGaCCUUAAGAUUUAAa -3' miRNA: 3'- -AGUGu--ACAUAcUC-GGAAUUCUAAAUU- -5' |
|||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 15399 | 0.72 | 0.999943 |
Target: 5'- -aACAaGUGUaAGCCUUAGGGUUUAAc -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
|||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 163485 | 0.72 | 0.999923 |
Target: 5'- -aACAaGUAU-AGCCUUAGGAUUUAAa -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
|||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 12699 | 0.73 | 0.999821 |
Target: 5'- -gACA-GUAUaAGCCUUAAGAUUUAAc -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
|||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 42268 | 0.73 | 0.999767 |
Target: 5'- cUCACuUGUAUaAGCCUUAGGAcUUAAc -3' miRNA: 3'- -AGUGuACAUAcUCGGAAUUCUaAAUU- -5' |
|||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 175731 | 0.74 | 0.999699 |
Target: 5'- -aACAaGUaAUGAGCUUUAGGAUUUAAa -3' miRNA: 3'- agUGUaCA-UACUCGGAAUUCUAAAUU- -5' |
|||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 43812 | 0.74 | 0.999379 |
Target: 5'- aUACGUGUuugcuaugcucGUGcaAGCCUUAGGAUUUAAa -3' miRNA: 3'- aGUGUACA-----------UAC--UCGGAAUUCUAAAUU- -5' |
|||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 46294 | 0.74 | 0.999379 |
Target: 5'- -aACAaGUAUaAGCCUUAGGAUUUAAa -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
|||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 1521 | 0.74 | 0.999379 |
Target: 5'- -aACAaGUAUaAGCCUUAGGAUUUAAa -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
|||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 158173 | 0.75 | 0.998801 |
Target: 5'- -aACAaGUAUaAGCCUUAAGAUUUAAa -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
|||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 149798 | 0.75 | 0.998801 |
Target: 5'- -aACAaGUAUaAGCCUUAAGAUUUAAa -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home