miRNA display CGI


Results 61 - 80 of 375 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 51416 0.68 1
Target:  5'- aUUAAagggUUAAUAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUggaaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 93711 0.68 1
Target:  5'- aUUAuCCUU----UACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUuGGAAaauuGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 177828 0.69 1
Target:  5'- aUUAACUUU-----GCCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAaauugUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 158318 0.69 1
Target:  5'- --uGCCUUaggaguuaaagaaUUAAUACCUAGGCUGc-- -3'
miRNA:   3'- aauUGGAA-------------AAUUGUGGAUUCGAUaua -5'
28269 3' -40.6 NC_005902.1 + 144980 0.69 1
Target:  5'- uUUAAUCcUUUAAUACUaAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGaUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 50817 0.69 1
Target:  5'- -cAACCcUUUAACAUCUAAaCUAUAUa -3'
miRNA:   3'- aaUUGGaAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 95569 0.69 1
Target:  5'- -cGAUCUUucaguuuuaaaagUUAACAUCUAAGUUAUAUa -3'
miRNA:   3'- aaUUGGAA-------------AAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 27646 0.69 1
Target:  5'- --uGCCUUaggaguuaaagaaUUAAUACCUAGGCUGc-- -3'
miRNA:   3'- aauUGGAA-------------AAUUGUGGAUUCGAUaua -5'
28269 3' -40.6 NC_005902.1 + 133229 0.69 1
Target:  5'- --cACCUUUUAACACCUGu-UUAUAUu -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUucGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 174967 0.69 1
Target:  5'- gUUAAUUc--UAACACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaaaAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 34712 0.69 1
Target:  5'- ---uUCUUUUAACACCUAuaCUAUAUa -3'
miRNA:   3'- aauuGGAAAAUUGUGGAUucGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 180826 0.69 1
Target:  5'- --uACCU---AACACCUAAGCgAUAUa -3'
miRNA:   3'- aauUGGAaaaUUGUGGAUUCGaUAUA- -5'
28269 3' -40.6 NC_005902.1 + 71750 0.69 1
Target:  5'- --uACCUUUUAACACCUAcaCUAc-- -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUucGAUaua -5'
28269 3' -40.6 NC_005902.1 + 12538 0.69 1
Target:  5'- uUUAACCcUUUAAUACCUAAaUUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 68281 0.69 1
Target:  5'- --uAUCUUUUAACuCCUAAGCcAUAUa -3'
miRNA:   3'- aauUGGAAAAUUGuGGAUUCGaUAUA- -5'
28269 3' -40.6 NC_005902.1 + 101124 0.69 1
Target:  5'- aUUAAcCCUUUaAAUAUUUAAGCUAUAUa -3'
miRNA:   3'- -AAUU-GGAAAaUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 137492 0.69 1
Target:  5'- aUUAACCcUUUAAUACCUAAaUUAUAUg -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 147753 0.7 0.999999
Target:  5'- --uACU--UUAACAUCUAAGCUAUAa -3'
miRNA:   3'- aauUGGaaAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 138763 0.7 1
Target:  5'- uUUAAUCUcaacacaAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAaaa----UUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 146586 0.7 0.999999
Target:  5'- gUAuCCaUUcUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- aAUuGG-AAaAUUGUGGAUUCGAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.