miRNA display CGI


Results 81 - 100 of 375 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 67282 0.7 0.999999
Target:  5'- gUUAACCUUUUAACuCCUaAAGCa---- -3'
miRNA:   3'- -AAUUGGAAAAUUGuGGA-UUCGauaua -5'
28269 3' -40.6 NC_005902.1 + 146586 0.7 0.999999
Target:  5'- gUAuCCaUUcUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- aAUuGG-AAaAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 140051 0.7 0.999999
Target:  5'- --cAUCaUUUAAUACUUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 138763 0.7 1
Target:  5'- uUUAAUCUcaacacaAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAaaa----UUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 147753 0.7 0.999999
Target:  5'- --uACU--UUAACAUCUAAGCUAUAa -3'
miRNA:   3'- aauUGGaaAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 179692 0.7 1
Target:  5'- uUUAuCCUUUaaa-ACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUuGGAAAauugUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 87059 0.71 0.999998
Target:  5'- aUAACUUUUUAAUcCUUAAGUUAUAUa -3'
miRNA:   3'- aAUUGGAAAAUUGuGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 27875 0.71 0.999996
Target:  5'- uUUAAagggUUAAUGCCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUggaaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 116669 0.71 0.999998
Target:  5'- -cAAUUUUUUAACACCUGaAGCUuAUAUa -3'
miRNA:   3'- aaUUGGAAAAUUGUGGAU-UCGA-UAUA- -5'
28269 3' -40.6 NC_005902.1 + 178357 0.71 0.999999
Target:  5'- aUAAUUUUUUuACucuACCUAAGCUAUAUa -3'
miRNA:   3'- aAUUGGAAAAuUG---UGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 72214 0.71 0.999998
Target:  5'- uUUAAUCcgUUAACACCUAAaCUAUAUa -3'
miRNA:   3'- -AAUUGGaaAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 122764 0.71 0.999998
Target:  5'- gUAACCcUUUAACcUUUAAGCUAUAUg -3'
miRNA:   3'- aAUUGGaAAAUUGuGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 103986 0.71 0.999998
Target:  5'- --cACCaUUUAAUAUUUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 55062 0.71 0.999999
Target:  5'- --uACCcUUUAACACCUAAGUucacuUGUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCG-----AUAUA- -5'
28269 3' -40.6 NC_005902.1 + 161769 0.71 0.999998
Target:  5'- uUUAAUCcUUUAACACCUAAGgUGUc- -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCgAUAua -5'
28269 3' -40.6 NC_005902.1 + 122900 0.71 0.999999
Target:  5'- --cAUCUUUUAACAUCUAAGUgAUAUa -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGaUAUA- -5'
28269 3' -40.6 NC_005902.1 + 67817 0.71 0.999999
Target:  5'- aUUAACCUUUUAACuCCUaAAGCa---- -3'
miRNA:   3'- -AAUUGGAAAAUUGuGGA-UUCGauaua -5'
28269 3' -40.6 NC_005902.1 + 167433 0.71 0.999998
Target:  5'- --uACCuUUUUAACuCCUAAGUUAUAUa -3'
miRNA:   3'- aauUGG-AAAAUUGuGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 90591 0.72 0.999992
Target:  5'- --uACCUUaagagUUAagggguaaaACACCUAAGCUGUAUa -3'
miRNA:   3'- aauUGGAA-----AAU---------UGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 41846 0.72 0.999984
Target:  5'- cUUAACCcUUUAACAUCUAAaCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUcGAUAUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.