miRNA display CGI


Results 101 - 120 of 375 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 113783 0.72 0.999995
Target:  5'- --uACCcUUUAACAaCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUgGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 142143 0.72 0.999992
Target:  5'- gUUAACUUUUUAAcCAUCUAuuuaAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUU-GUGGAU----UCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 140870 0.72 0.999989
Target:  5'- ------cUUUAACAUCUAAGCUGUAUa -3'
miRNA:   3'- aauuggaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 162748 0.72 0.999984
Target:  5'- gUUAuCCcUUUAACAUUUAAGCUAUAUg -3'
miRNA:   3'- -AAUuGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 130950 0.72 0.999995
Target:  5'- uUUAAUCcUUUAAUACUUAAGUUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 63359 0.72 0.999992
Target:  5'- uUUAACUcUUUAACAUCUcuAAGCUAUAc -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGA--UUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 81269 0.72 0.999982
Target:  5'- -aAGCCaauguuaaagggUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- aaUUGGaa----------AAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 133616 0.72 0.999992
Target:  5'- uUUAAagggUUAACACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUggaaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 29085 0.72 0.999995
Target:  5'- gUUAAUCcUUUAAUAUUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 69370 0.72 0.999995
Target:  5'- --uACCgUUUAACACCUAAaCUAUAUg -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 71307 0.72 0.999995
Target:  5'- --uGCCUUgggaguuaggggUUAACAUCUAAGUUAUAUa -3'
miRNA:   3'- aauUGGAA------------AAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 41846 0.72 0.999984
Target:  5'- cUUAACCcUUUAACAUCUAAaCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 57232 0.73 0.999968
Target:  5'- uUUAACUcUUUAACAUCUuAGCUGUGa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAuUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 23819 0.73 0.999967
Target:  5'- aUUAACUUuucaacaUUUAACAUUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGA-------AAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 180346 0.73 0.99994
Target:  5'- gUUAAUUcUUUAACcCCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGuGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 140683 0.73 0.99994
Target:  5'- -cAACuCUUUUAACAUCcAAGCUAUAa -3'
miRNA:   3'- aaUUG-GAAAAUUGUGGaUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 133833 0.73 0.99994
Target:  5'- --cACCcUUUAACACCUAAGUgAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGaUAUA- -5'
28269 3' -40.6 NC_005902.1 + 1195 0.73 0.999977
Target:  5'- gUUAAagggUUAACACCUAAGUUAUAUa -3'
miRNA:   3'- -AAUUggaaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 154566 0.73 0.999977
Target:  5'- uUUAugUUUUUGAUuuuuaacccuuuACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUugGAAAAUUG------------UGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 42102 0.73 0.99994
Target:  5'- gUUAACCcUUUAACAUCUAAacuuGCUGUAUu -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUU----CGAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.