miRNA display CGI


Results 61 - 80 of 375 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 117725 0.89 0.720203
Target:  5'- aUUAACCcUUUAACAUCUAAGCUAUAUg -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 71599 0.89 0.731471
Target:  5'- uUUAAUCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 54866 0.89 0.742628
Target:  5'- aUUAACCcUUUAACACCUAAGCUAUu- -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAua -5'
28269 3' -40.6 NC_005902.1 + 137432 0.89 0.708836
Target:  5'- --cACCUUUUAACAUCUAAGCUAUAc -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 48375 0.89 0.708836
Target:  5'- gUUAACCcUUUAACACCUAAGUUAUGUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 30793 0.89 0.731471
Target:  5'- uUUAACCcUUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 136564 0.89 0.720203
Target:  5'- cUUAACCcUUUAACACCUAAGUUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 170528 0.89 0.708836
Target:  5'- aUUAACCUUUUAACACCUAAaCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 34810 0.89 0.708836
Target:  5'- gUUAACCcUUUAACACCUAAGUUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 61616 0.89 0.731471
Target:  5'- uUUAACCcUUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 143014 0.89 0.731471
Target:  5'- uUUAACCcUUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 85336 0.89 0.731471
Target:  5'- uUUAACCcUUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 145941 0.89 0.731471
Target:  5'- uUUAACCcUUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 172601 0.89 0.742628
Target:  5'- uUUAACCcUUUAACACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 88560 0.89 0.708836
Target:  5'- uUUAACCcUUUAACACCUAAGUUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 105263 0.88 0.775286
Target:  5'- --uACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 143772 0.88 0.775286
Target:  5'- --uACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 165886 0.88 0.775286
Target:  5'- --uACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 101061 0.88 0.775286
Target:  5'- aUUAACCUUUUAACACUUAAGCgAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUCGaUAUA- -5'
28269 3' -40.6 NC_005902.1 + 158224 0.88 0.775286
Target:  5'- cUUAACCcUUUAAUGCCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.