miRNA display CGI


Results 81 - 100 of 375 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 165886 0.88 0.775286
Target:  5'- --uACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 105263 0.88 0.775286
Target:  5'- --uACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 172814 0.88 0.775286
Target:  5'- --uACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 101061 0.88 0.775286
Target:  5'- aUUAACCUUUUAACACUUAAGCgAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUCGaUAUA- -5'
28269 3' -40.6 NC_005902.1 + 158224 0.88 0.775286
Target:  5'- cUUAACCcUUUAAUGCCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 41019 0.88 0.785857
Target:  5'- aUAAUCUUUUAAUACUUAAGCUAUAUa -3'
miRNA:   3'- aAUUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 36162 0.88 0.785857
Target:  5'- ---cCCUUUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- aauuGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 80732 0.87 0.796247
Target:  5'- -aAACUcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aaUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 146422 0.87 0.796247
Target:  5'- aUUAAUCcUUUAACACCUAAGCUAUAa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 78853 0.87 0.796247
Target:  5'- aUUAACCUUUUAACcCUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGuGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 47180 0.87 0.806444
Target:  5'- gUUAACC-UUUAACACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 98623 0.87 0.816436
Target:  5'- uUUAACCUUUUAcccccuucAUACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAU--------UGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 165944 0.87 0.816436
Target:  5'- --cACCUUUUAAUACUUAAGCUAUAUa -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 50042 0.86 0.835752
Target:  5'- --uACCcUUUAACACCUAAGCUAUGUu -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 76081 0.86 0.854103
Target:  5'- aUUAACCcUUUAAgACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUgUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 109912 0.86 0.862891
Target:  5'- uUUAACCcUUUAAgACCUAAGCUAUAUg -3'
miRNA:   3'- -AAUUGGaAAAUUgUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 156335 0.86 0.862891
Target:  5'- cUAACUUUUUAACAUUUAAGCUAUAUa -3'
miRNA:   3'- aAUUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 167248 0.85 0.871407
Target:  5'- --uACUUUUUAACACCUAAGUUAUAUa -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 151283 0.85 0.871407
Target:  5'- gUUAAUCU--UAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAaaAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 97435 0.85 0.871407
Target:  5'- --uACCcUUUAACACCUAAGCUAUAc -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.