miRNA display CGI


Results 101 - 120 of 375 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 157838 0.85 0.878833
Target:  5'- uUUAACUUuucaauaUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGA-------AAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 41977 0.85 0.887594
Target:  5'- uUUAAUUgUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 51606 0.85 0.895249
Target:  5'- -aAACCcUUUAAUACCUAAGCUGUGa -3'
miRNA:   3'- aaUUGGaAAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 92003 0.85 0.895249
Target:  5'- uUUAACUUUUUaAAUACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAA-UUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 31086 0.85 0.895249
Target:  5'- --cACCUUUUAACACCcAAGCUAUGa -3'
miRNA:   3'- aauUGGAAAAUUGUGGaUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 107796 0.84 0.902606
Target:  5'- uUUAACUcUUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 23283 0.84 0.902606
Target:  5'- aUUAAUCcUUUAAUACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 54933 0.84 0.909658
Target:  5'- aUUAACCcUUUAAUACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 98934 0.84 0.916403
Target:  5'- aUUAACCcUUUAACcCCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGuGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 114540 0.84 0.916403
Target:  5'- cUUAcCCcUUUAACACCUAGGCUAUAUa -3'
miRNA:   3'- -AAUuGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 61519 0.84 0.916403
Target:  5'- uUUAACCcUUUAAUACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 143641 0.84 0.916403
Target:  5'- --uACCUUUUAACAUCUAAGUUAUAa -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 158115 0.84 0.916403
Target:  5'- uUUAACCcUUUAAUACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 142153 0.84 0.922837
Target:  5'- --cACUcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 147586 0.83 0.928961
Target:  5'- aUUAAUCcugUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaaaAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 40966 0.83 0.928961
Target:  5'- --cACCcUUUAAUACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 81836 0.83 0.928961
Target:  5'- ---uCCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauuGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 133673 0.83 0.928961
Target:  5'- --uACUcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 86389 0.83 0.928961
Target:  5'- --uACUcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 167155 0.83 0.928961
Target:  5'- ---uCCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauuGGaAAAUUGUGGAUUCGAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.