miRNA display CGI


Results 61 - 80 of 375 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 160882 0.67 1
Target:  5'- ------aUUUAACcCCUAAGCUAUAUa -3'
miRNA:   3'- aauuggaAAAUUGuGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 127469 0.67 1
Target:  5'- --uACUcUUUAACACaUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGgAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 144980 0.69 1
Target:  5'- uUUAAUCcUUUAAUACUaAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGaUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 133229 0.69 1
Target:  5'- --cACCUUUUAACACCUGu-UUAUAUu -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUucGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 158318 0.69 1
Target:  5'- --uGCCUUaggaguuaaagaaUUAAUACCUAGGCUGc-- -3'
miRNA:   3'- aauUGGAA-------------AAUUGUGGAUUCGAUaua -5'
28269 3' -40.6 NC_005902.1 + 177828 0.69 1
Target:  5'- aUUAACUUU-----GCCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAaauugUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 179692 0.7 1
Target:  5'- uUUAuCCUUUaaa-ACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUuGGAAAauugUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 138763 0.7 1
Target:  5'- uUUAAUCUcaacacaAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAaaa----UUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 175934 0.66 1
Target:  5'- aUUAACCcUUUAACuCCUAAGgUAUc- -3'
miRNA:   3'- -AAUUGGaAAAUUGuGGAUUCgAUAua -5'
28269 3' -40.6 NC_005902.1 + 5382 0.66 1
Target:  5'- --cACCUUUUAACAaCUAAaCUAUAUa -3'
miRNA:   3'- aauUGGAAAAUUGUgGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 20057 0.68 1
Target:  5'- aUUAACCcUUUAACACaUAAGCcAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGgAUUCGaUAUA- -5'
28269 3' -40.6 NC_005902.1 + 116877 0.68 1
Target:  5'- aUUAACCcUUUAAUuCCUAAGaCUAUAc -3'
miRNA:   3'- -AAUUGGaAAAUUGuGGAUUC-GAUAUa -5'
28269 3' -40.6 NC_005902.1 + 95402 0.68 1
Target:  5'- aUUAAUCcUUUAACACCUAAaUUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 67571 0.68 1
Target:  5'- -aAACCUUaaaauuuaaaaagUUAACAUCUAAGCUc--- -3'
miRNA:   3'- aaUUGGAA-------------AAUUGUGGAUUCGAuaua -5'
28269 3' -40.6 NC_005902.1 + 159442 0.68 1
Target:  5'- cUUAACCUUUUAAUACUUAuGUuuUAUAa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUuCG--AUAUa -5'
28269 3' -40.6 NC_005902.1 + 157171 0.68 1
Target:  5'- aUGcCCUaggaaUUAAUACCUAAGUUAUAUa -3'
miRNA:   3'- aAUuGGAa----AAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 38412 0.68 1
Target:  5'- -------aUUAACAUCUAAGCUAUAc -3'
miRNA:   3'- aauuggaaAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 68949 0.68 1
Target:  5'- aUAAUauaaggUUAAUACUUAAGCUAUAUa -3'
miRNA:   3'- aAUUGgaa---AAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 26884 0.68 1
Target:  5'- --uACCUUUU-AUGCCUGGuGCUAUGUg -3'
miRNA:   3'- aauUGGAAAAuUGUGGAUU-CGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 67358 0.68 1
Target:  5'- --uACCUUUUAACAaCUAAGUUAg-- -3'
miRNA:   3'- aauUGGAAAAUUGUgGAUUCGAUaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.