miRNA display CGI


Results 61 - 80 of 375 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 31086 0.85 0.895249
Target:  5'- --cACCUUUUAACACCcAAGCUAUGa -3'
miRNA:   3'- aauUGGAAAAUUGUGGaUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 31415 0.83 0.934772
Target:  5'- --uACCcUUUAAUACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 32864 0.66 1
Target:  5'- --uAUCUUUUAAUACCUaAAGCUuAUAc -3'
miRNA:   3'- aauUGGAAAAUUGUGGA-UUCGA-UAUa -5'
28269 3' -40.6 NC_005902.1 + 34712 0.69 1
Target:  5'- ---uUCUUUUAACACCUAuaCUAUAUa -3'
miRNA:   3'- aauuGGAAAAUUGUGGAUucGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 34810 0.89 0.708836
Target:  5'- gUUAACCcUUUAACACCUAAGUUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 36092 0.82 0.963228
Target:  5'- uUUAACCcUUUAACACCUAAGgUGUGg -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCgAUAUa -5'
28269 3' -40.6 NC_005902.1 + 36162 0.88 0.785857
Target:  5'- ---cCCUUUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- aauuGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 36795 0.97 0.388079
Target:  5'- aUUAACCUUUUAACACUUAAGCUAUAc -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 36897 0.77 0.99804
Target:  5'- gUUAGCCUUUUAACuCCUAAGgCUAg-- -3'
miRNA:   3'- -AAUUGGAAAAUUGuGGAUUC-GAUaua -5'
28269 3' -40.6 NC_005902.1 + 37194 0.81 0.976494
Target:  5'- uUUGACCUUUUAAUACauauuUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGg----AUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 37250 0.82 0.959228
Target:  5'- aUAACUUUaucUUAACACUUAAGCUAUAUa -3'
miRNA:   3'- aAUUGGAA---AAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 37767 0.79 0.992058
Target:  5'- --uAUCUUUUAACACCUAAGCUu--- -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGAuaua -5'
28269 3' -40.6 NC_005902.1 + 38412 0.68 1
Target:  5'- -------aUUAACAUCUAAGCUAUAc -3'
miRNA:   3'- aauuggaaAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 39092 0.91 0.63932
Target:  5'- uUUAACUcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 39405 0.67 1
Target:  5'- gUUAAaggug-AAUACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUggaaaaUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 40061 0.89 0.742628
Target:  5'- uUUAACCcUUUAACACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 40665 0.78 0.995103
Target:  5'- aUUAACCcUUUAACGuuUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUggAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 40902 0.67 1
Target:  5'- uUUAACUUguuaauccUUAAUACCUAAaGCUAUAa -3'
miRNA:   3'- -AAUUGGAa-------AAUUGUGGAUU-CGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 40966 0.83 0.928961
Target:  5'- --cACCcUUUAAUACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 41019 0.88 0.785857
Target:  5'- aUAAUCUUUUAAUACUUAAGCUAUAUa -3'
miRNA:   3'- aAUUGGAAAAUUGUGGAUUCGAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.