miRNA display CGI


Results 81 - 100 of 375 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 41846 0.72 0.999984
Target:  5'- cUUAACCcUUUAACAUCUAAaCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 41977 0.85 0.887594
Target:  5'- uUUAAUUgUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 42102 0.73 0.99994
Target:  5'- gUUAACCcUUUAACAUCUAAacuuGCUGUAUu -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUU----CGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 42233 0.97 0.37861
Target:  5'- uUUAACCUcUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 42976 0.82 0.966946
Target:  5'- --uACCcUUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 43521 0.83 0.940273
Target:  5'- aUUAACCUUUUAACAUCUAAcCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 44013 0.98 0.333641
Target:  5'- --uACCUUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 45077 0.98 0.333641
Target:  5'- --uACCUUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 46930 0.92 0.581053
Target:  5'- uUUAACCUgUUAAUACCUAAGCUAUAUg -3'
miRNA:   3'- -AAUUGGAaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 47180 0.87 0.806444
Target:  5'- gUUAACC-UUUAACACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 47231 0.95 0.448036
Target:  5'- cUUAACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 48109 0.75 0.999471
Target:  5'- --uACCcUUUAACAUUUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 48249 0.82 0.954938
Target:  5'- uUUAAUCcUUUAACACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 48375 0.89 0.708836
Target:  5'- gUUAACCcUUUAACACCUAAGUUAUGUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 48459 0.66 1
Target:  5'- -cAACCUUUUAGCuCCUAuGGCa---- -3'
miRNA:   3'- aaUUGGAAAAUUGuGGAU-UCGauaua -5'
28269 3' -40.6 NC_005902.1 + 49433 0.9 0.662655
Target:  5'- --uACCUUUUAACACCUAAGUUAUAa -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 49951 0.76 0.998698
Target:  5'- --uACCcUUUAACuCCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGuGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 50042 0.86 0.835752
Target:  5'- --uACCcUUUAACACCUAAGCUAUGUu -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 50100 0.76 0.999158
Target:  5'- aUUAAcCCUUUgauccUAACACCUAAGCUAc-- -3'
miRNA:   3'- -AAUU-GGAAA-----AUUGUGGAUUCGAUaua -5'
28269 3' -40.6 NC_005902.1 + 50207 0.95 0.437685
Target:  5'- aUAACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aAUUGGaAAAUUGUGGAUUCGAUAUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.