miRNA display CGI


Results 101 - 120 of 375 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 50460 0.79 0.989305
Target:  5'- gUUAGCCUUUUAAUACCUAAaaUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUcgAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 50817 0.69 1
Target:  5'- -cAACCcUUUAACAUCUAAaCUAUAUa -3'
miRNA:   3'- aaUUGGaAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 51416 0.68 1
Target:  5'- aUUAAagggUUAAUAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUggaaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 51606 0.85 0.895249
Target:  5'- -aAACCcUUUAAUACCUAAGCUGUGa -3'
miRNA:   3'- aaUUGGaAAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 51668 0.89 0.708836
Target:  5'- uUUAAcCCUUUUAACACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUU-GGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 51845 0.89 0.720203
Target:  5'- aUUAACCcUUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 52768 1 0.285011
Target:  5'- uUUAACCUUUUAACACCUAAGUUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 54048 0.83 0.928961
Target:  5'- aUAuCCU-UUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aAUuGGAaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 54332 0.79 0.990762
Target:  5'- --uGCUUUaaaggaUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGAA------AAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 54866 0.89 0.742628
Target:  5'- aUUAACCcUUUAACACCUAAGCUAUu- -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAua -5'
28269 3' -40.6 NC_005902.1 + 54875 0.81 0.97357
Target:  5'- gUUAGCUUUgaacccUUAAUACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAA------AAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 54933 0.84 0.909658
Target:  5'- aUUAACCcUUUAAUACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 55062 0.71 0.999999
Target:  5'- --uACCcUUUAACACCUAAGUucacuUGUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCG-----AUAUA- -5'
28269 3' -40.6 NC_005902.1 + 57232 0.73 0.999968
Target:  5'- uUUAACUcUUUAACAUCUuAGCUGUGa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAuUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 58224 0.67 1
Target:  5'- --uACUcUUUAACACaUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGgAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 58613 0.79 0.990762
Target:  5'- uUUAACCcUUUAAgACUUAAGCUGUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUgUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 58804 0.66 1
Target:  5'- --uACUUUUUAACauuuuaaACUUAAGCUAUAa -3'
miRNA:   3'- aauUGGAAAAUUG-------UGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 60462 0.95 0.437685
Target:  5'- uUUAACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 61519 0.84 0.916403
Target:  5'- uUUAACCcUUUAAUACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 61616 0.89 0.731471
Target:  5'- uUUAACCcUUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.