miRNA display CGI


Results 121 - 140 of 375 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 61657 0.66 1
Target:  5'- aUAGCUUagauguuaaagagUUAAUAUCUAAGCUAUAc -3'
miRNA:   3'- aAUUGGAa------------AAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 63235 0.76 0.998698
Target:  5'- --uACCcUUUAACcCCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGuGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 63359 0.72 0.999992
Target:  5'- uUUAACUcUUUAACAUCUcuAAGCUAUAc -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGA--UUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 65748 0.73 0.999956
Target:  5'- aUUAAUCcUUUAACACCUGAaCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 67282 0.7 0.999999
Target:  5'- gUUAACCUUUUAACuCCUaAAGCa---- -3'
miRNA:   3'- -AAUUGGAAAAUUGuGGA-UUCGauaua -5'
28269 3' -40.6 NC_005902.1 + 67356 0.66 1
Target:  5'- uUUAACCcUUUAACcCCUAA-CUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGuGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 67358 0.68 1
Target:  5'- --uACCUUUUAACAaCUAAGUUAg-- -3'
miRNA:   3'- aauUGGAAAAUUGUgGAUUCGAUaua -5'
28269 3' -40.6 NC_005902.1 + 67571 0.68 1
Target:  5'- -aAACCUUaaaauuuaaaaagUUAACAUCUAAGCUc--- -3'
miRNA:   3'- aaUUGGAA-------------AAUUGUGGAUUCGAuaua -5'
28269 3' -40.6 NC_005902.1 + 67701 0.93 0.523959
Target:  5'- aUUAACCUUUUAACuCCUAGGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGuGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 67817 0.71 0.999999
Target:  5'- aUUAACCUUUUAACuCCUaAAGCa---- -3'
miRNA:   3'- -AAUUGGAAAAUUGuGGA-UUCGauaua -5'
28269 3' -40.6 NC_005902.1 + 68281 0.69 1
Target:  5'- --uAUCUUUUAACuCCUAAGCcAUAUa -3'
miRNA:   3'- aauUGGAAAAUUGuGGAUUCGaUAUA- -5'
28269 3' -40.6 NC_005902.1 + 68932 0.91 0.615955
Target:  5'- --uACCUUUUAACACUUAAGCUAUAUa -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 68949 0.68 1
Target:  5'- aUAAUauaaggUUAAUACUUAAGCUAUAUa -3'
miRNA:   3'- aAUUGgaa---AAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 69066 0.67 1
Target:  5'- --uAUUUgUUAACACCUAAGCUuaAUAUg -3'
miRNA:   3'- aauUGGAaAAUUGUGGAUUCGA--UAUA- -5'
28269 3' -40.6 NC_005902.1 + 69178 0.89 0.731471
Target:  5'- uUUAACCcUUUAACAUCUAAGCUAUAUg -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 69223 0.75 0.999471
Target:  5'- uUUAACC-UUUAACACCUAAGUa---- -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGauaua -5'
28269 3' -40.6 NC_005902.1 + 69370 0.72 0.999995
Target:  5'- --uACCgUUUAACACCUAAaCUAUAUg -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 71192 0.89 0.708836
Target:  5'- uUUAACCuUUUUAACACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGG-AAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 71205 0.92 0.604291
Target:  5'- aUAACCUUUUAAUGCUUAAGCUAUAUa -3'
miRNA:   3'- aAUUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 71307 0.72 0.999995
Target:  5'- --uGCCUUgggaguuaggggUUAACAUCUAAGUUAUAUa -3'
miRNA:   3'- aauUGGAA------------AAUUGUGGAUUCGAUAUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.