miRNA display CGI


Results 41 - 60 of 375 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 167248 0.85 0.871407
Target:  5'- --uACUUUUUAACACCUAAGUUAUAUa -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 167155 0.83 0.928961
Target:  5'- ---uCCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauuGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 166126 0.77 0.998397
Target:  5'- --uACCcUUUAAUACUUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 165944 0.87 0.816436
Target:  5'- --cACCUUUUAAUACUUAAGCUAUAUa -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 165886 0.88 0.775286
Target:  5'- --uACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 165715 0.83 0.940273
Target:  5'- --uAUCUaUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGAaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 164694 0.8 0.983845
Target:  5'- gUUAAUCaUUUAAUGCCUAAGCUAUAa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 163492 0.82 0.954493
Target:  5'- aUAGCCUUaggauuuaaaggaUUAACAUCUAAGCUAUAa -3'
miRNA:   3'- aAUUGGAA-------------AAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 163382 0.9 0.697385
Target:  5'- uUUAAcCCUUUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUU-GGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 162748 0.72 0.999984
Target:  5'- gUUAuCCcUUUAACAUUUAAGCUAUAUg -3'
miRNA:   3'- -AAUuGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 162721 0.67 1
Target:  5'- --uACCUU---AUACCUAAGCUAc-- -3'
miRNA:   3'- aauUGGAAaauUGUGGAUUCGAUaua -5'
28269 3' -40.6 NC_005902.1 + 162588 0.67 1
Target:  5'- gUUAAUa----AAUACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGgaaaaUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 162530 0.89 0.742628
Target:  5'- uUUAACCcUUUAACACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 162385 0.76 0.99933
Target:  5'- aUUuuCCcUUUAACACCUAAGCUAc-- -3'
miRNA:   3'- -AAuuGGaAAAUUGUGGAUUCGAUaua -5'
28269 3' -40.6 NC_005902.1 + 161769 0.71 0.999998
Target:  5'- uUUAAUCcUUUAACACCUAAGgUGUc- -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCgAUAua -5'
28269 3' -40.6 NC_005902.1 + 160975 0.66 1
Target:  5'- -cAACgCUUUaggaguuaaaggggUAAUAUCUAAGCUAUAUa -3'
miRNA:   3'- aaUUG-GAAA--------------AUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 160882 0.67 1
Target:  5'- ------aUUUAACcCCUAAGCUAUAUa -3'
miRNA:   3'- aauuggaAAAUUGuGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 159736 0.94 0.479876
Target:  5'- gUUAAUCUUUUAAUACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 159503 0.76 0.99933
Target:  5'- cUUAACCcUUUAACAUUUAAGCUAUu- -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAua -5'
28269 3' -40.6 NC_005902.1 + 159442 0.68 1
Target:  5'- cUUAACCUUUUAAUACUUAuGUuuUAUAa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUuCG--AUAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.